- t -

• T92() : bpp::T92
• targetValue() : bpp::Value< T >
• testBit() : bpp::BipartitionTools
• testNNI() : bpp::DRTreeParsimonyScore , bpp::NNIHomogeneousTreeLikelihood , bpp::NNISearchable
• thresholdConsensus() : bpp::TreeTools
• TN93() : bpp::TN93
• to() : bpp::MixtureOfATransitionModel
• to_string() : bpp::ModelPath::PathNode
• toMatrix() : bpp::BipartitionList
• topology() : bpp::DRTreeParsimonyScore , bpp::NNIHomogeneousTreeLikelihood , bpp::NNISearchable , bpp::NNITopologySearch
• TopologyChangeEvent() : bpp::TopologyChangeEvent
• topologyChangePerformed() : bpp::TopologyListener
• topologyChangeSuccessful() : bpp::DRTreeParsimonyScore , bpp::NNIHomogeneousTreeLikelihood , bpp::NNITopologyListener2 , bpp::NNITopologyListener , bpp::TopologyListener
• topologyChangeTested() : bpp::DRTreeParsimonyScore , bpp::NNIHomogeneousTreeLikelihood , bpp::NNITopologyListener2 , bpp::NNITopologyListener , bpp::TopologyListener
• TopologyListener() : bpp::TopologyListener
• TopologySearch() : bpp::TopologySearch
• toString() : bpp::ModelPath , bpp::ModelScenario , bpp::NodeEvent
• TotalSubstitutionRegister() : bpp::TotalSubstitutionRegister
• toTree() : bpp::BipartitionList
• transform() : bpp::NumericalDependencyTransform< T > , bpp::NumericalDependencyTransform< Transposed< T > >
• TransitionFromTransitionModel() : bpp::TransitionFromTransitionModel
• TransitionFunctionFromModel() : bpp::TransitionFunctionFromModel
• TransitionMatrixFromModel() : bpp::TransitionMatrixFromModel
• TransitionMatrixFromTransitionMatrix() : bpp::TransitionMatrixFromTransitionMatrix
• transitionModel() : bpp::AbstractBiblioMixedTransitionModel , bpp::AbstractFromSubstitutionModelTransitionModel , bpp::AbstractWrappedSubstitutionModel , bpp::MultinomialFromTransitionModel , bpp::RegisterRatesSubstitutionModel , bpp::TransitionFromTransitionModel , bpp::WrappedTransitionModelInterface
• transitionModel_() : bpp::AbstractBiblioMixedTransitionModel , bpp::AbstractFromSubstitutionModelTransitionModel , bpp::AbstractWrappedSubstitutionModel , bpp::AbstractWrappedTransitionModel , bpp::RegisterRatesSubstitutionModel , bpp::TransitionFromTransitionModel
• TransitionModelInterface() : bpp::TransitionModelInterface
• transpose() : bpp::ExtendedFloatEigen< R, C, EigenType >
• tree() : bpp::AbstractAgglomerativeDistanceMethod , bpp::AbstractTreeLikelihood , bpp::AbstractTreeParsimonyData , bpp::AbstractTreeParsimonyScore , bpp::DistanceMethodInterface , bpp::LegacyAbstractMapping , bpp::LegacyMappingInterface , bpp::NonHomogeneousSequenceSimulator , bpp::OneProcessSequenceEvolution , bpp::OneProcessSequencePhyloLikelihood , bpp::SingleProcessPhyloLikelihood , bpp::SubstitutionProcessCollection
• Tree() : bpp::Tree
• tree() : bpp::TreeLikelihoodInterface , bpp::TreeParsimonyDataInterface , bpp::TreeParsimonyScoreInterface
• tree_() : bpp::AbstractTreeParsimonyScore
• TreeDrawing() : bpp::TreeDrawing
• TreeDrawingDisplayControler() : bpp::TreeDrawingDisplayControler
• TreeDrawingListenerAdapter() : bpp::TreeDrawingListenerAdapter
• TreeDrawingNodeInfo() : bpp::TreeDrawingNodeInfo
• TreeDrawingSettings() : bpp::TreeDrawingSettings
• TreeException() : bpp::TreeException
• treeHasChanged() : bpp::AbstractTreeDrawing , bpp::CladogramPlot , bpp::PhylogramPlot
• TreeIterator() : bpp::TreeIterator
• TreeLikelihoodData() : bpp::TreeLikelihoodData
• TreeLikelihoodInterface() : bpp::TreeLikelihoodInterface
• TreeLikelihoodNodeData() : bpp::TreeLikelihoodNodeData
• TreeLikelihoodTools() : bpp::TreeLikelihoodTools
• TreeParsimonyDataInterface() : bpp::TreeParsimonyDataInterface
• TreeParsimonyNodeDataInterface() : bpp::TreeParsimonyNodeDataInterface
• TreeParsimonyScoreInterface() : bpp::TreeParsimonyScoreInterface
• treeTemplate() : bpp::AbstractTreeParsimonyScore
• TreeTemplate() : bpp::TreeTemplate< N >
• treeTemplate_() : bpp::AbstractTreeParsimonyScore
• TreeTemplateTools() : bpp::TreeTemplateTools
• TreeTools() : bpp::TreeTools
• treeToParenthesis() : bpp::Newick , bpp::Nhx , bpp::TreeTemplateTools , bpp::TreeTools
• TripletSubstitutionModel() : bpp::TripletSubstitutionModel
• TrivialSitePartition() : bpp::TrivialSitePartition
• TS98() : bpp::TS98
• TsTvSubstitutionRegister() : bpp::TsTvSubstitutionRegister
• TwoParameterBinarySubstitutionModel() : bpp::TwoParameterBinarySubstitutionModel