- b -

• B_ : bpp::AbstractCodonBGCSubstitutionModel , bpp::gBGC
• b_ : bpp::GTR
• backupFile : bpp::OptimizationTools::OptimizationOptions
• backwardLik_ : bpp::HmmLikelihood_DF
• beta_ : bpp::AbstractCodonAARateSubstitutionModel , bpp::AbstractCodonDistanceSubstitutionModel , bpp::L95 , bpp::RN95 , bpp::RN95s , bpp::SSR
• BETTER : bpp::NNITopologySearch
• biggest_normalized_radix_power : bpp::ExtendedFloat
• biggest_normalized_value : bpp::ExtendedFloat
• biggest_repr_radix_power : bpp::ExtendedFloat
• BINARY : bpp::BppOSubstitutionModelFormat
• bitBipartitionList_ : bpp::BipartitionList
• blt : bpp::LikelihoodCalculationSingleProcess::RateCategoryTrees
• bMatrices_ : bpp::DecompositionMethods , bpp::UniformizationSubstitutionCount
• BOOTSTRAP : bpp::PhyloTreeTools
• bootstrap : bpp::TreeTemplateTools::Element
• BOOTSTRAP : bpp::TreeTools
• bootstrapPropertyName_ : bpp::Newick
• bppLik_ : bpp::CWiseApply< R, T, F >
• BPPO_FORMAT : bpp::IOFrequencySetFactory , bpp::IOSubstitutionModelFactory
• branch_ : bpp::PhyloBranchPException
• branchId_ : bpp::PhyloBranchException
• branchLengths_ : bpp::PhyloStatistics
• branchModelDescription_ : bpp::AbstractTreeLikelihood::ConstNoPartitionBranchModelIterator
• branchProperties_ : bpp::Node
• brentOptimizer_ : bpp::NNIHomogeneousTreeLikelihood
• brLen_ : bpp::LegacyOptimizationTools::ScaleFunction
• brlen_ : bpp::LikelihoodCalculationOnABranch::RateCategoryEdge , bpp::ProcessEdge
• brLenConstraint_ : bpp::AbstractHomogeneousTreeLikelihood , bpp::AbstractNonHomogeneousTreeLikelihood , bpp::ParametrizablePhyloTree
• brLenNNIParams_ : bpp::NNIHomogeneousTreeLikelihood
• brLenNNIValues_ : bpp::NNIHomogeneousTreeLikelihood
• brLenParameters_ : bpp::AbstractHomogeneousTreeLikelihood , bpp::AbstractNonHomogeneousTreeLikelihood
• brLikFunction_ : bpp::NNIHomogeneousTreeLikelihood
• brprob_ : bpp::ProcessEdge