Collaboration diagram for bpp::LikelihoodCalculationSingleProcess::RateCategoryTrees:
Public Member Functions | |
| ~RateCategoryTrees () | |
Public Attributes | |
| std::shared_ptr< ProcessTree > | phyloTree |
| std::shared_ptr< ForwardLikelihoodTree > | flt |
| std::shared_ptr< BackwardLikelihoodTree > | blt |
| backward likelihood tree (only computed when needed) More... | |
| std::shared_ptr< ConditionalLikelihoodDAG > | clt |
| for each node n: clt[n] = flt[n] * dlt[n] More... | |
| std::shared_ptr< SiteLikelihoodsDAG > | lt |
| for each node n: clt[n] = sum_states(clt[n][s]) More... | |
| std::shared_ptr< SiteLikelihoodsTree > | speciesLt |
| for each node n: lt[n] = sum_{state s} flt[n][s] More... | |
Detailed Description
Definition at line 116 of file LikelihoodCalculationSingleProcess.h.
Constructor & Destructor Documentation
◆ ~RateCategoryTrees()
| LikelihoodCalculationSingleProcess::RateCategoryTrees::~RateCategoryTrees | ( | ) |
Definition at line 819 of file LikelihoodCalculationSingleProcess.cpp.
Member Data Documentation
◆ blt
| std::shared_ptr<BackwardLikelihoodTree> bpp::LikelihoodCalculationSingleProcess::RateCategoryTrees::blt |
backward likelihood tree (only computed when needed)
Definition at line 125 of file LikelihoodCalculationSingleProcess.h.
◆ clt
| std::shared_ptr<ConditionalLikelihoodDAG> bpp::LikelihoodCalculationSingleProcess::RateCategoryTrees::clt |
for each node n: clt[n] = flt[n] * dlt[n]
Definition at line 130 of file LikelihoodCalculationSingleProcess.h.
◆ flt
| std::shared_ptr<ForwardLikelihoodTree> bpp::LikelihoodCalculationSingleProcess::RateCategoryTrees::flt |
Definition at line 120 of file LikelihoodCalculationSingleProcess.h.
Referenced by ~RateCategoryTrees().
◆ lt
| std::shared_ptr<SiteLikelihoodsDAG> bpp::LikelihoodCalculationSingleProcess::RateCategoryTrees::lt |
for each node n: clt[n] = sum_states(clt[n][s])
Definition at line 135 of file LikelihoodCalculationSingleProcess.h.
◆ phyloTree
| std::shared_ptr<ProcessTree> bpp::LikelihoodCalculationSingleProcess::RateCategoryTrees::phyloTree |
Definition at line 119 of file LikelihoodCalculationSingleProcess.h.
Referenced by ~RateCategoryTrees().
◆ speciesLt
| std::shared_ptr<SiteLikelihoodsTree> bpp::LikelihoodCalculationSingleProcess::RateCategoryTrees::speciesLt |
for each node n: lt[n] = sum_{state s} flt[n][s]
Site Likelihoods on the tree, with shrunked positions, summed on all paths.
This is only computed when node specific likelihood is computed.
Definition at line 146 of file LikelihoodCalculationSingleProcess.h.
The documentation for this class was generated from the following files:
- Bpp/Phyl/Likelihood/DataFlow/LikelihoodCalculationSingleProcess.h
- Bpp/Phyl/Likelihood/DataFlow/LikelihoodCalculationSingleProcess.cpp
