bpp::MafStatistics Class Reference

General interface for computing statistics based on a Maf block. More...

#include <Bpp/Seq/Io/Maf/MafStatistics.h>

Inheritance diagram for bpp::MafStatistics:

Public Member Functions
	MafStatistics ()
virtual	~MafStatistics ()
virtual std::string	getShortName () const =0
virtual std::string	getFullName () const =0
virtual const MafStatisticsResult &	getResult () const =0
virtual void	compute (const MafBlock &block)=0
virtual std::vector< std::string >	getSupportedTags () const =0

Detailed Description

General interface for computing statistics based on a Maf block.

Author

Julien Dutheil

See also

MafBlock

Definition at line 208 of file MafStatistics.h.

Constructor & Destructor Documentation

MafStatistics()

bpp::MafStatistics::MafStatistics ( )

inline

Definition at line 211 of file MafStatistics.h.

~MafStatistics()

virtual bpp::MafStatistics::~MafStatistics ( )

inlinevirtual

Definition at line 212 of file MafStatistics.h.

Member Function Documentation

compute()

virtual void bpp::MafStatistics::compute ( const MafBlock &  block )

pure virtual

Implemented in bpp::SequenceDiversityMafStatistics, bpp::PolymorphismMafStatistics, bpp::SiteMafStatistics, bpp::FourSpeciesPatternCountsMafStatistics, bpp::SiteFrequencySpectrumMafStatistics, bpp::CharacterCountsMafStatistics, bpp::AlignmentScoreMafStatistics, bpp::SequenceLengthMafStatistics, bpp::BlockLengthMafStatistics, bpp::BlockSizeMafStatistics, and bpp::PairwiseDivergenceMafStatistics.

getFullName()

virtual std::string bpp::MafStatistics::getFullName ( ) const

pure virtual

Implemented in bpp::SequenceDiversityMafStatistics, bpp::PolymorphismMafStatistics, bpp::SiteMafStatistics, bpp::FourSpeciesPatternCountsMafStatistics, bpp::SiteFrequencySpectrumMafStatistics, bpp::CharacterCountsMafStatistics, bpp::AlignmentScoreMafStatistics, bpp::SequenceLengthMafStatistics, bpp::BlockLengthMafStatistics, bpp::BlockSizeMafStatistics, and bpp::PairwiseDivergenceMafStatistics.

getResult()

virtual const MafStatisticsResult& bpp::MafStatistics::getResult ( ) const

pure virtual

Implemented in bpp::AbstractMafStatisticsSimple, and bpp::AbstractMafStatistics.

getShortName()

virtual std::string bpp::MafStatistics::getShortName ( ) const

pure virtual

Implemented in bpp::SequenceDiversityMafStatistics, bpp::PolymorphismMafStatistics, bpp::SiteMafStatistics, bpp::FourSpeciesPatternCountsMafStatistics, bpp::SiteFrequencySpectrumMafStatistics, bpp::CharacterCountsMafStatistics, bpp::AlignmentScoreMafStatistics, bpp::SequenceLengthMafStatistics, bpp::BlockLengthMafStatistics, bpp::BlockSizeMafStatistics, and bpp::PairwiseDivergenceMafStatistics.

getSupportedTags()

virtual std::vector<std::string> bpp::MafStatistics::getSupportedTags ( ) const

pure virtual

Returns

A vector with all available tags.

Implemented in bpp::SequenceDiversityMafStatistics, bpp::PolymorphismMafStatistics, bpp::SiteMafStatistics, bpp::FourSpeciesPatternCountsMafStatistics, bpp::SiteFrequencySpectrumMafStatistics, bpp::CharacterCountsMafStatistics, and bpp::AbstractMafStatisticsSimple.

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The documentation for this class was generated from the following file:

• Bpp/Seq/Io/Maf/MafStatistics.h