bpp::AbstractMafStatistics Class Reference

Partial implementation of MafStatistics, for convenience. More...

#include <Bpp/Seq/Io/Maf/MafStatistics.h>

Inheritance diagram for bpp::AbstractMafStatistics:

Collaboration diagram for bpp::AbstractMafStatistics:

Public Member Functions
	AbstractMafStatistics ()
virtual	~AbstractMafStatistics ()
const MafStatisticsResult &	getResult () const
virtual std::string	getShortName () const =0
virtual std::string	getFullName () const =0
virtual void	compute (const MafBlock &block)=0
virtual std::vector< std::string >	getSupportedTags () const =0

Protected Attributes
MafStatisticsResult	result_

Detailed Description

Partial implementation of MafStatistics, for convenience.

Definition at line 230 of file MafStatistics.h.

Constructor & Destructor Documentation

AbstractMafStatistics()

bpp::AbstractMafStatistics::AbstractMafStatistics ( )

inline

Definition at line 237 of file MafStatistics.h.

~AbstractMafStatistics()

virtual bpp::AbstractMafStatistics::~AbstractMafStatistics ( )

inlinevirtual

Definition at line 238 of file MafStatistics.h.

Member Function Documentation

compute()

virtual void bpp::MafStatistics::compute ( const MafBlock &  block )

pure virtualinherited

Implemented in bpp::SequenceDiversityMafStatistics, bpp::PolymorphismMafStatistics, bpp::SiteMafStatistics, bpp::FourSpeciesPatternCountsMafStatistics, bpp::SiteFrequencySpectrumMafStatistics, bpp::CharacterCountsMafStatistics, bpp::AlignmentScoreMafStatistics, bpp::SequenceLengthMafStatistics, bpp::BlockLengthMafStatistics, bpp::BlockSizeMafStatistics, and bpp::PairwiseDivergenceMafStatistics.

getFullName()

virtual std::string bpp::MafStatistics::getFullName ( ) const

pure virtualinherited

Implemented in bpp::SequenceDiversityMafStatistics, bpp::PolymorphismMafStatistics, bpp::SiteMafStatistics, bpp::FourSpeciesPatternCountsMafStatistics, bpp::SiteFrequencySpectrumMafStatistics, bpp::CharacterCountsMafStatistics, bpp::AlignmentScoreMafStatistics, bpp::SequenceLengthMafStatistics, bpp::BlockLengthMafStatistics, bpp::BlockSizeMafStatistics, and bpp::PairwiseDivergenceMafStatistics.

getResult()

const MafStatisticsResult& bpp::AbstractMafStatistics::getResult ( ) const

inlinevirtual

Implements bpp::MafStatistics.

Definition at line 241 of file MafStatistics.h.

References result_.

getShortName()

virtual std::string bpp::MafStatistics::getShortName ( ) const

pure virtualinherited

Implemented in bpp::SequenceDiversityMafStatistics, bpp::PolymorphismMafStatistics, bpp::SiteMafStatistics, bpp::FourSpeciesPatternCountsMafStatistics, bpp::SiteFrequencySpectrumMafStatistics, bpp::CharacterCountsMafStatistics, bpp::AlignmentScoreMafStatistics, bpp::SequenceLengthMafStatistics, bpp::BlockLengthMafStatistics, bpp::BlockSizeMafStatistics, and bpp::PairwiseDivergenceMafStatistics.

getSupportedTags()

virtual std::vector<std::string> bpp::MafStatistics::getSupportedTags ( ) const

pure virtualinherited

Returns

A vector with all available tags.

Implemented in bpp::SequenceDiversityMafStatistics, bpp::PolymorphismMafStatistics, bpp::SiteMafStatistics, bpp::FourSpeciesPatternCountsMafStatistics, bpp::SiteFrequencySpectrumMafStatistics, bpp::CharacterCountsMafStatistics, and bpp::AbstractMafStatisticsSimple.

Member Data Documentation

result_

MafStatisticsResult bpp::AbstractMafStatistics::result_

protected

Definition at line 234 of file MafStatistics.h.

Referenced by bpp::CharacterCountsMafStatistics::compute(), bpp::SiteFrequencySpectrumMafStatistics::compute(), bpp::FourSpeciesPatternCountsMafStatistics::compute(), bpp::SiteMafStatistics::compute(), bpp::PolymorphismMafStatistics::compute(), bpp::SequenceDiversityMafStatistics::compute(), and getResult().

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The documentation for this class was generated from the following file:

• Bpp/Seq/Io/Maf/MafStatistics.h