AbstractMafStatistics() | bpp::AbstractMafStatistics | inline |
AbstractSpeciesSelectionMafStatistics(const std::vector< std::string > &species, bool noSpeciesMeansAllSpecies=false, const std::string &suffix="") | bpp::AbstractSpeciesSelectionMafStatistics | inline |
alphabet_ | bpp::SiteFrequencySpectrumMafStatistics | private |
categorizer_ | bpp::SiteFrequencySpectrumMafStatistics | private |
compute(const MafBlock &block) | bpp::SiteFrequencySpectrumMafStatistics | virtual |
counts_ | bpp::SiteFrequencySpectrumMafStatistics | private |
getFullName() const | bpp::SiteFrequencySpectrumMafStatistics | inlinevirtual |
getResult() const | bpp::AbstractMafStatistics | inlinevirtual |
getShortName() const | bpp::SiteFrequencySpectrumMafStatistics | inlinevirtual |
getSiteContainer_(const MafBlock &block) | bpp::AbstractSpeciesSelectionMafStatistics | protected |
getSupportedTags() const | bpp::SiteFrequencySpectrumMafStatistics | virtual |
MafStatistics() | bpp::MafStatistics | inline |
noSpeciesMeansAllSpecies_ | bpp::AbstractSpeciesSelectionMafStatistics | private |
operator=(const SiteFrequencySpectrumMafStatistics &stats) | bpp::SiteFrequencySpectrumMafStatistics | inline |
outgroup_ | bpp::SiteFrequencySpectrumMafStatistics | private |
result_ | bpp::AbstractMafStatistics | protected |
SiteFrequencySpectrumMafStatistics(const Alphabet *alphabet, const std::vector< double > &bounds, const std::vector< std::string > &ingroup, const std::string outgroup="") | bpp::SiteFrequencySpectrumMafStatistics | inline |
SiteFrequencySpectrumMafStatistics(const SiteFrequencySpectrumMafStatistics &stats) | bpp::SiteFrequencySpectrumMafStatistics | inline |
species_ | bpp::AbstractSpeciesSelectionMafStatistics | private |
suffix_ | bpp::AbstractSpeciesSelectionMafStatistics | protected |
~AbstractMafStatistics() | bpp::AbstractMafStatistics | inlinevirtual |
~MafStatistics() | bpp::MafStatistics | inlinevirtual |
~SiteFrequencySpectrumMafStatistics() | bpp::SiteFrequencySpectrumMafStatistics | inlinevirtual |