Here is a list of all files with brief descriptions:

[detail level 12345]

▼ Bpp
▼ Seq
▼ Feature
▼ Bed
BedGraphFeatureReader.cpp
BedGraphFeatureReader.h
▼ Gff
GffFeatureReader.cpp
GffFeatureReader.h
▼ Gtf
GtfFeatureReader.cpp
GtfFeatureReader.h
FeatureReader.h
SequenceFeature.cpp
SequenceFeature.h
SequenceFeatureTools.cpp
SequenceFeatureTools.h
▼ Io
▼ Maf
AlignmentFilterMafIterator.cpp
AlignmentFilterMafIterator.h
BlockLengthMafIterator.h
BlockMergerMafIterator.cpp
BlockMergerMafIterator.h
BlockSizeMafIterator.h
ChromosomeMafIterator.cpp
ChromosomeMafIterator.h
ConcatenateMafIterator.cpp
ConcatenateMafIterator.h
CoordinatesOutputMafIterator.cpp
CoordinatesOutputMafIterator.h
CoordinateTranslatorMafIterator.cpp
CoordinateTranslatorMafIterator.h
DuplicateFilterMafIterator.cpp
DuplicateFilterMafIterator.h
EntropyFilterMafIterator.cpp
EntropyFilterMafIterator.h
FeatureExtractorMafIterator.cpp
FeatureExtractorMafIterator.h
FeatureFilterMafIterator.cpp
FeatureFilterMafIterator.h
FullGapFilterMafIterator.cpp
FullGapFilterMafIterator.h
IterationListener.cpp
IterationListener.h
MafBlock.h
MafIterator.cpp
MafIterator.h
MafParser.cpp
MafParser.h
MafSequence.cpp
MafSequence.h
MafStatistics.cpp
MafStatistics.h
MaskFilterMafIterator.cpp
MaskFilterMafIterator.h
MsmcOutputMafIterator.cpp
MsmcOutputMafIterator.h
OrderFilterMafIterator.cpp
OrderFilterMafIterator.h
OrphanSequenceFilterMafIterator.cpp
OrphanSequenceFilterMafIterator.h
OutputAlignmentMafIterator.cpp
OutputAlignmentMafIterator.h
OutputMafIterator.cpp
OutputMafIterator.h
PlinkOutputMafIterator.cpp
PlinkOutputMafIterator.h
QualityFilterMafIterator.cpp
QualityFilterMafIterator.h
RemoveEmptySequencesMafIterator.cpp
RemoveEmptySequencesMafIterator.h
SequenceFilterMafIterator.cpp
SequenceFilterMafIterator.h
SequenceLDhotOutputMafIterator.cpp
SequenceLDhotOutputMafIterator.h
SequenceStatisticsMafIterator.cpp
SequenceStatisticsMafIterator.h
SequenceStreamToMafIterator.cpp
SequenceStreamToMafIterator.h
TableOutputMafIterator.cpp
TableOutputMafIterator.h
VcfOutputMafIterator.cpp
VcfOutputMafIterator.h
WindowSplitMafIterator.cpp
WindowSplitMafIterator.h
Fastq.cpp
Fastq.h