bpp::StreamSequenceWithQualityIterator Class Reference

A sequence iterator based on a sequence stream. More...

#include <Bpp/Seq/Io/StreamSequenceIterator.h>

Inheritance diagram for bpp::StreamSequenceWithQualityIterator:

Collaboration diagram for bpp::StreamSequenceWithQualityIterator:

Public Member Functions
	StreamSequenceWithQualityIterator (ISequenceStream &seqStream, std::istream &stream, const Alphabet *alphabet)
virtual	~StreamSequenceWithQualityIterator ()
virtual SequenceWithQuality *	nextSequence ()
virtual bool	hasMoreSequences () const

Private Member Functions
	StreamSequenceWithQualityIterator (const StreamSequenceWithQualityIterator &ssi)
StreamSequenceWithQualityIterator &	operator= (const StreamSequenceWithQualityIterator &ssi)

Private Attributes
const Alphabet *	alphabet_
const ISequenceStream *	seqStream_
std::istream *	stream_
SequenceWithQuality *	nextSeq_

Detailed Description

A sequence iterator based on a sequence stream.

This iterator uses a bpp::SequenceWithQuality object for storing sequences.

Definition at line 100 of file StreamSequenceIterator.h.

Constructor & Destructor Documentation

StreamSequenceWithQualityIterator() [1/2]

StreamSequenceWithQualityIterator::StreamSequenceWithQualityIterator	(	ISequenceStream &	seqStream,
		std::istream &	stream,
		const Alphabet *	alphabet
	)

Definition at line 76 of file StreamSequenceIterator.cpp.

References nextSeq_, bpp::ISequenceStream::nextSequence(), seqStream_, and stream_.

~StreamSequenceWithQualityIterator()

virtual bpp::StreamSequenceWithQualityIterator::~StreamSequenceWithQualityIterator ( )

inlinevirtual

Definition at line 112 of file StreamSequenceIterator.h.

StreamSequenceWithQualityIterator() [2/2]

bpp::StreamSequenceWithQualityIterator::StreamSequenceWithQualityIterator ( const StreamSequenceWithQualityIterator &  ssi )

inlineprivate

Definition at line 116 of file StreamSequenceIterator.h.

Member Function Documentation

hasMoreSequences()

virtual bool bpp::StreamSequenceWithQualityIterator::hasMoreSequences ( ) const

inlinevirtual

Implements bpp::SequenceIterator.

Definition at line 134 of file StreamSequenceIterator.h.

References nextSeq_.

nextSequence()

SequenceWithQuality * StreamSequenceWithQualityIterator::nextSequence ( )

virtual

Implements bpp::SequenceWithQualityIterator.

Definition at line 90 of file StreamSequenceIterator.cpp.

References alphabet_, nextSeq_, bpp::ISequenceStream::nextSequence(), seqStream_, and stream_.

operator=()

StreamSequenceWithQualityIterator& bpp::StreamSequenceWithQualityIterator::operator= ( const StreamSequenceWithQualityIterator &  ssi )

inlineprivate

Definition at line 122 of file StreamSequenceIterator.h.

References alphabet_, nextSeq_, seqStream_, and stream_.

Member Data Documentation

alphabet_

const Alphabet* bpp::StreamSequenceWithQualityIterator::alphabet_

private

Definition at line 104 of file StreamSequenceIterator.h.

Referenced by nextSequence(), and operator=().

nextSeq_

SequenceWithQuality* bpp::StreamSequenceWithQualityIterator::nextSeq_

private

Definition at line 107 of file StreamSequenceIterator.h.

Referenced by hasMoreSequences(), nextSequence(), operator=(), and StreamSequenceWithQualityIterator().

seqStream_

const ISequenceStream* bpp::StreamSequenceWithQualityIterator::seqStream_

private

Definition at line 105 of file StreamSequenceIterator.h.

Referenced by nextSequence(), operator=(), and StreamSequenceWithQualityIterator().

stream_

std::istream* bpp::StreamSequenceWithQualityIterator::stream_

private

Definition at line 106 of file StreamSequenceIterator.h.

Referenced by nextSequence(), operator=(), and StreamSequenceWithQualityIterator().

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The documentation for this class was generated from the following files:

• Bpp/Seq/Io/StreamSequenceIterator.h
• Bpp/Seq/Io/StreamSequenceIterator.cpp