Publications citations and statistics can be found on ResearcherID:

My PhD thesis

Marc Bailly-Bechet (2007). Biais de codons et régulation de la traduction chez les bactéries et leurs phages. Download here (in french)

Journal articles

  1. Fanny Pouyet, Marc Bailly-Bechet, Dominique Mouchiroud and Laurent Guéguen (2016) SENCA: A Multilayered Codon Model to Study the Origins and Dynamics of Codon Usage Genome Biology and Evolution 8(8):2427-2441 Website PDF

  2. Martine Boccara, Yasmina Fedala, Catherine Venien Bryan, Marc Bailly-Bechet, Chris Bowler and Albert Claude Boccara (2016) Full-field interferometry for counting and differentiating aquatic biotic nanoparticles: from laboratory to Tara Oceans Biomedical Optics Express 7(9):3736-3746 Website PDF

  3. Maria Kondili, Maguelonne Roux, Nicolas Vabret and Marc Bailly-Bechet (2016). Innate immune system activation by viral RNA: how to predict it? Virology 488:169-178 Website PDF.

  4. Marc Bailly-Bechet, Annabelle Haudry and Emmanuelle Lerat (2014). "One code to find them all": a perl tool to conveniently parse RepeatMasker output files Mobile DNA 5:13 Website PDF Software.

  5. Nicolas Vabret, Marc Bailly-Bechet, Alice Lepelley, Valérie Najburg, Olivier Schwartz, Bernard Verrier and Frédéric Tangy (2014). Large-scale nucleotide optimization of simian immunodeficiency virus (SIV) reduces its capacity to stimulate type-I IFN in vitro. Journal of Virology 88(8):4161-72 Website PDF.

  6. Bérénice Benayoun, Mikko Antonnen, David L'Hôte, Marc Bailly-Bechet, Noora Andersson, Markku Heikinheimo and Reiner A. Veitia (2013). Adult ovarian granulosa cell tumor transcriptomics: prevalence of FOXL2 target genes misregulation gives insights into the pathogenic mechanism of the p.Cys134Trp somatic mutation. Oncogene 32 (22):2739-46 Website PDF

  7. Nicolas Vabret, Marc Bailly-Bechet, Valérie Najburg, Michaela Müller-Trutwin, Bernard Verrier and Frédéric Tangy (2012). Biased Nucleotide Composition of Primate Lentiviruses Triggers Type I Interferon Response and its Divergence with Host Correlates with AIDS Pathology. PLoS One 7(4):e33502 Website PDF

  8. Eugénie Pessia, Takashi Makino, Marc Bailly-Bechet, Aoife McLysaght and Gabriel Marais (2012). Mammalian X Chromosome Inactivation evolved as a dosage compensation mechanism for dosage-sensitive genes on the X chromosome. Proceedings of the National Academy of Sciences of America 109(14):5346-5351 Website PDF.

  9. Marc Bailly-Bechet, Alfredo Braunstein, Adilia Dagkmaneskaia, Jennifer Chayes, Christian Borgs, Jean-Marie François and Riccardo Zecchina (2011). Finding undetected protein associations in cell signaling by belief propagation. Proceedings of the National Academy of Sciences of America 108(2):882-887 Website PDF.

  10. Marc Bailly-Bechet, Arndt Benecke, Wolf-Dietrich Hardt, Valentina Lanza, Alex Sturm and Riccardo Zecchina (2011). An externally modulated, noise-driven switch for the regulation of SPI1 in Salmonella enterica serovar Typhimurium. Journal of Mathematical Biology 63(4):637-662 Website PDF.

  11. Marc Bailly-Bechet, Andrea Pagnani, Alfredo Braunstein, Martin Weigt and Riccardo Zecchina (2010). Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach. BMC Bioinformatics 11:355 Website PDF

  12. Marc Bailly-Bechet, Serena Bradde, Alfredo Brausntein, Abraham Flaxman, Laura Foini and Riccardo Zecchina (2009). Clustering with shallow trees. Journal of Statistical Mechanics P12010 Website PDF

  13. Jean-Baptiste Masson, Marc Bailly-Bechet and Massimo Vergassola (2009). Chasing information in random environments. Journal of Physics A 42:434009 Website PDF

  14. Marc Bailly-Bechet, Michel Kerszberg, Françoise Gaill and Florence Pradillon (2008). A modeling approach to the influence of local hydrodynamic conditions on larval dispersal at hydrothermal vents. Journal of Theoretical Biology 255(3):320-331 Website PDF

  15. Bérénice Benayoun, Sandrine Caburet, Aurélie Dipietromaria, Marc Bailly-Bechet, Marc Fellous, Daniel Vaiman and Reiner A. Veitia (2008). The identification and characterization of a FOXL2 response element provides insights into the pathogenesis of mutant alleles. Human Molecular Genetics 17(20):3118-3127 Website PDF

  16. Marc Bailly-Bechet, Massimo Vergassola and Eduardo Rocha (2007). Causes for the intriguing presence of tRNAS in phages. Genome Research 17:1486-1495 Website PDF

  17. Marc Bailly-Bechet, Antoine Danchin, Mudassar Iqbal, Matteo Marsili and Massimo Vergassola (2006). Codon usage domains over bacterial chromosomes. PLoS Computational Biology 2(4):e37 Website PDF


  1. Fanny Pouyet, Julien Jacquemetton, Marc Bailly-Bechet and Laurent Gueguen (2013) Codon usage in E. coli: an evolutionary approach. JOBIM 2013. Website PDF
  1. Marc Bailly-Bechet, Alfredo Braunstein and Riccardo Zecchina (2009) A prize-collecting Steiner tree approach for transduction network inference. CMSB'09. Website PDF