PhylogeneticsApplicationTools.h File Reference

#include "../Likelihood/ModelScenario.h"
#include "../Likelihood/PhyloLikelihoods/PhyloLikelihoodContainer.h"
#include "../Likelihood/PhyloLikelihoods/AlignedPhyloLikelihoodSet.h"
#include "../Likelihood/PhyloLikelihoods/SingleDataPhyloLikelihood.h"
#include "../Likelihood/SequenceEvolution.h"
#include "../Likelihood/AutonomousSubstitutionProcess.h"
#include "../Likelihood/SubstitutionProcessCollection.h"
#include "../Likelihood/SubstitutionProcessCollectionMember.h"
#include "../Mapping/SubstitutionCount.h"
#include "../Model/MarkovModulatedSubstitutionModel.h"
#include "../Model/SubstitutionModel.h"
#include "../Tree/PhyloTree.h"
#include "../Likelihood/DataFlow/DataFlow.h"
#include <Bpp/Io/OutputStream.h>
#include <Bpp/Numeric/Function/Optimizer.h>
#include <Bpp/Numeric/Prob/DiscreteDistribution.h>
#include <Bpp/Numeric/Prob/MultipleDiscreteDistribution.h>
#include <Bpp/Text/TextTools.h>
#include <Bpp/Seq/Container/SiteContainer.h>
#include <Bpp/Seq/Container/VectorSiteContainer.h>
#include <Bpp/Seq/AlphabetIndex/AlphabetIndex2.h>
#include <Bpp/Seq/Io/BppOAlphabetIndex2Format.h>
#include <string>
#include <map>
#include <memory>
#include <vector>

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Classes
class	bpp::PhylogeneticsApplicationTools
	This class provides some common tools for applications. More...

Namespaces
namespace	bpp
	Defines the basic types of data flow nodes.