LLG08_EX3.h

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// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
#ifndef BPP_PHYL_MODEL_PROTEIN_LLG08_EX3_H
#define BPP_PHYL_MODEL_PROTEIN_LLG08_EX3_H
 
 
#include "../AbstractBiblioMixedTransitionModel.h"
#include "../AbstractSubstitutionModel.h"
#include "../MixtureOfSubstitutionModels.h"
#include "ProteinSubstitutionModel.h"
 
using namespace std;
 
namespace bpp
{
class LLG08_EX3 :
  public AbstractBiblioMixedTransitionModel
{
public:
  class EmbeddedModel :
    public AbstractReversibleProteinSubstitutionModel
  {
private:
    double proportion_;
    string name_;
 
public:
    EmbeddedModel(std::shared_ptr<const ProteicAlphabet> alpha, string name);
    EmbeddedModel* clone() const override { return new EmbeddedModel(*this); }
    string getName() const override { return name_;}
    double getProportion() const { return proportion_;}
  };
 
public:
  LLG08_EX3(std::shared_ptr<const ProteicAlphabet> alpha);
 
  LLG08_EX3* clone() const override { return new LLG08_EX3(*this); }
 
  std::string getName() const override { return "LLG08_EX3"; }
};
} // end of namespace bpp.
#endif // BPP_PHYL_MODEL_PROTEIN_LLG08_EX3_H