NonHomogeneousSequenceSimulator.h File Reference

#include "../../Simulation/DetailedSiteSimulator.h"
#include "../../Simulation/SequenceSimulator.h"
#include "../../Tree/TreeTemplate.h"
#include "../../Tree/NodeTemplate.h"
#include "../../Model/SubstitutionModel.h"
#include "../../Likelihood/ParametrizablePhyloTree.h"
#include <Bpp/Numeric/Random/RandomTools.h>
#include <Bpp/Numeric/Prob/DiscreteDistribution.h>
#include <Bpp/Seq/Alphabet/Alphabet.h>
#include <Bpp/Seq/Site.h>
#include <Bpp/Seq/Container/SiteContainer.h>
#include <map>
#include <vector>
#include "../Model/SubstitutionModelSet.h"

Include dependency graph for NonHomogeneousSequenceSimulator.h:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Classes
class	bpp::SimData
class	bpp::NonHomogeneousSequenceSimulator
	(Legacy) Site and sequences simulation under non-homogeneous models. More...

Namespaces
	bpp
	Defines the basic types of data flow nodes.

Typedefs
typedef NodeTemplate< SimData >	bpp::SNode