#include <Bpp/App/ApplicationTools.h>
#include <Bpp/Io/OutputStream.h>
#include <Bpp/Numeric/Function/SimpleNewtonMultiDimensions.h>
#include <Bpp/Phyl/Likelihood/PhyloLikelihoods/SingleProcessPhyloLikelihood.h>
#include "Distance/DistanceEstimation.h"
#include "Distance/AbstractAgglomerativeDistanceMethod.h"

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Classes
class	bpp::NaNListener
	A listener which capture NaN function values and throw an exception in case this happens. More...

class	bpp::OptimizationTools
	Optimization methods for phylogenetic inference. More...

class	bpp::OptimizationTools::OptimizationOptions

Namespaces
namespace	bpp
	Defines the basic types of data flow nodes.

Classes

Namespaces