#include <Eigen/Core>
#include "FrequencySet/FrequencySet.h"
#include "StateMap.h"
#include <Bpp/Exceptions.h>
#include <Bpp/Numeric/Parameter.h>
#include <Bpp/Numeric/ParameterList.h>
#include <Bpp/Numeric/ParameterAliasable.h>
#include <Bpp/Numeric/VectorTools.h>
#include <Bpp/Numeric/Matrix/Matrix.h>
#include <Bpp/Seq/Alphabet/Alphabet.h>
#include <Bpp/Seq/Container/AlignmentData.h>
#include <cstdlib>
#include <map>
#include <string>

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Classes
class	bpp::BranchModelInterface
	Interface for all Branch models. More...

class	bpp::TransitionModelInterface
	Interface for all transition models. More...

class	bpp::SubstitutionModelInterface
	Interface for all substitution models. More...

class	bpp::ReversibleSubstitutionModelInterface
	Interface for reversible substitution models. More...

Namespaces
namespace	bpp
	Defines the basic types of data flow nodes.

Classes

Namespaces