TreeParsimonyData.h

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// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
#ifndef BPP_PHYL_PARSIMONY_TREEPARSIMONYDATA_H
#define BPP_PHYL_PARSIMONY_TREEPARSIMONYDATA_H
 
#include <Bpp/Clonable.h>
 
#include "../Tree/Node.h"
#include "../Tree/TreeTemplate.h"
 
namespace bpp
{
class TreeParsimonyNodeDataInterface :
  public virtual Clonable
{
public:
  TreeParsimonyNodeDataInterface() {}
  virtual ~TreeParsimonyNodeDataInterface() {}
 
  TreeParsimonyNodeDataInterface* clone() const = 0;
 
public:
  virtual const Node* getNode() const = 0;
 
  virtual void setNode(const Node* node) = 0;
};
 
class TreeParsimonyDataInterface :
  public virtual Clonable
{
public:
  TreeParsimonyDataInterface() {}
  virtual ~TreeParsimonyDataInterface() {}
 
  TreeParsimonyDataInterface* clone() const override = 0;
 
public:
  virtual const TreeTemplate<Node>& tree() const = 0;
  virtual std::shared_ptr<const TreeTemplate<Node>> getTree() const = 0;
  virtual size_t getArrayPosition(int parentId, int sonId, size_t currentPosition) const = 0;
  virtual size_t getRootArrayPosition(size_t site) const = 0;
  virtual TreeParsimonyNodeDataInterface& nodeData(int nodeId) = 0;
  virtual const TreeParsimonyNodeDataInterface& nodeData(int nodeId) const = 0;
};
} // end of namespace bpp.
#endif // BPP_PHYL_PARSIMONY_TREEPARSIMONYDATA_H