Partial implementation of the OTree interface. More...

#include <Bpp/Phyl/Io/IoTree.h>

Inheritance diagram for bpp::AbstractOPhyloTree:

Collaboration diagram for bpp::AbstractOPhyloTree:

Public Member Functions
	AbstractOPhyloTree ()

virtual	~AbstractOPhyloTree ()

virtual void	writePhyloTree (const PhyloTree &tree, std::ostream &out) const =0
	Write a tree to a stream. More...

virtual void	writePhyloTree (const PhyloTree &tree, const std::string &path, bool overwrite) const
	Write a tree to a file. More...

virtual const std::string	getDataType () const

virtual const std::string	getFormatName () const=0

virtual const std::string	getFormatDescription () const=0

Detailed Description

Partial implementation of the OTree interface.

Definition at line 288 of file IoTree.h.

Constructor & Destructor Documentation

◆ AbstractOPhyloTree()

bpp::AbstractOPhyloTree::AbstractOPhyloTree ( )

inline

Definition at line 292 of file IoTree.h.

◆ ~AbstractOPhyloTree()

virtual bpp::AbstractOPhyloTree::~AbstractOPhyloTree ( )

inlinevirtual

Definition at line 293 of file IoTree.h.

Member Function Documentation

◆ getDataType()

virtual const std::string bpp::IOTree::getDataType ( ) const

inlinevirtualinherited

Implements bpp::IOFormat.

Definition at line 51 of file IoTree.h.

◆ writePhyloTree() [1/2]

virtual void bpp::AbstractOPhyloTree::writePhyloTree	(	const PhyloTree &	tree,
		const std::string &	path,
		bool	overwrite
	)		const

inlinevirtual

Write a tree to a file.

Parameters

tree	A tree object.
path	The file path.
overwrite	Tell if existing file must be overwritten. Otherwise append to the file.

Exceptions

Exception If an error occurred.

Implements bpp::OPhyloTree.

Definition at line 297 of file IoTree.h.

References bpp::IOException::what(), and writePhyloTree().

◆ writePhyloTree() [2/2]

virtual void bpp::AbstractOPhyloTree::writePhyloTree	(	const PhyloTree &	tree,
		std::ostream &	out
	)		const

pure virtual

Write a tree to a stream.