bpp::AbstractTreeLikelihood::ConstNoPartitionBranchModelDescription Class Reference

#include <Bpp/Phyl/Legacy/Likelihood/AbstractTreeLikelihood.h>

Inheritance diagram for bpp::AbstractTreeLikelihood::ConstNoPartitionBranchModelDescription:

Collaboration diagram for bpp::AbstractTreeLikelihood::ConstNoPartitionBranchModelDescription:

Public Member Functions
	ConstNoPartitionBranchModelDescription (std::shared_ptr< const TransitionModelInterface > model, size_t nbSites)
	ConstNoPartitionBranchModelDescription (const ConstNoPartitionBranchModelDescription &bmd)
ConstNoPartitionBranchModelDescription &	operator= (const ConstNoPartitionBranchModelDescription &bmd)
std::shared_ptr< const TransitionModelInterface >	getModel () const override
const TransitionModelInterface &	model () const override
std::shared_ptr< const SubstitutionModelInterface >	getSubstitutionModel () const override
const SubstitutionModelInterface &	substitutionModel () const override
SiteIterator *	getNewSiteIterator () const override

Private Attributes
std::shared_ptr< const TransitionModelInterface >	model_
size_t	nbSites_

Detailed Description

Definition at line 102 of file AbstractTreeLikelihood.h.

Constructor & Destructor Documentation

ConstNoPartitionBranchModelDescription() [1/2]

bpp::AbstractTreeLikelihood::ConstNoPartitionBranchModelDescription::ConstNoPartitionBranchModelDescription ( std::shared_ptr< const TransitionModelInterface >  model, size_t  nbSites  )

inline

Definition at line 110 of file AbstractTreeLikelihood.h.

ConstNoPartitionBranchModelDescription() [2/2]

bpp::AbstractTreeLikelihood::ConstNoPartitionBranchModelDescription::ConstNoPartitionBranchModelDescription ( const ConstNoPartitionBranchModelDescription &  bmd )

inline

Definition at line 113 of file AbstractTreeLikelihood.h.

Member Function Documentation

getModel()

std::shared_ptr<const TransitionModelInterface> bpp::AbstractTreeLikelihood::ConstNoPartitionBranchModelDescription::getModel ( ) const

inlineoverridevirtual

Implements bpp::TreeLikelihoodInterface::ConstBranchModelDescription.

Definition at line 126 of file AbstractTreeLikelihood.h.

References model_.

getNewSiteIterator()

SiteIterator* bpp::AbstractTreeLikelihood::ConstNoPartitionBranchModelDescription::getNewSiteIterator ( ) const

inlineoverridevirtual

Implements bpp::TreeLikelihoodInterface::ConstBranchModelDescription.

Definition at line 139 of file AbstractTreeLikelihood.h.

References nbSites_.

getSubstitutionModel()

std::shared_ptr<const SubstitutionModelInterface> bpp::AbstractTreeLikelihood::ConstNoPartitionBranchModelDescription::getSubstitutionModel ( ) const

inlineoverridevirtual

Implements bpp::TreeLikelihoodInterface::ConstBranchModelDescription.

Definition at line 129 of file AbstractTreeLikelihood.h.

References model_.

model()

const TransitionModelInterface& bpp::AbstractTreeLikelihood::ConstNoPartitionBranchModelDescription::model ( ) const

inlineoverridevirtual

Implements bpp::TreeLikelihoodInterface::ConstBranchModelDescription.

Definition at line 127 of file AbstractTreeLikelihood.h.

References model_.

operator=()

ConstNoPartitionBranchModelDescription& bpp::AbstractTreeLikelihood::ConstNoPartitionBranchModelDescription::operator= ( const ConstNoPartitionBranchModelDescription &  bmd )

inline

Definition at line 118 of file AbstractTreeLikelihood.h.

References model_, and nbSites_.

substitutionModel()

const SubstitutionModelInterface& bpp::AbstractTreeLikelihood::ConstNoPartitionBranchModelDescription::substitutionModel ( ) const

inlineoverridevirtual

Implements bpp::TreeLikelihoodInterface::ConstBranchModelDescription.

Definition at line 134 of file AbstractTreeLikelihood.h.

Member Data Documentation

model_

std::shared_ptr<const TransitionModelInterface> bpp::AbstractTreeLikelihood::ConstNoPartitionBranchModelDescription::model_

private

Definition at line 106 of file AbstractTreeLikelihood.h.

Referenced by getModel(), getSubstitutionModel(), model(), and operator=().

nbSites_

size_t bpp::AbstractTreeLikelihood::ConstNoPartitionBranchModelDescription::nbSites_

private

Definition at line 107 of file AbstractTreeLikelihood.h.

Referenced by getNewSiteIterator(), and operator=().

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The documentation for this class was generated from the following file:

• Bpp/Phyl/Legacy/Likelihood/AbstractTreeLikelihood.h