bpp::AbstractTreeLikelihood::ConstNoPartitionSiteModelDescription Class Reference

#include <Bpp/Phyl/Legacy/Likelihood/AbstractTreeLikelihood.h>

Inheritance diagram for bpp::AbstractTreeLikelihood::ConstNoPartitionSiteModelDescription:

Collaboration diagram for bpp::AbstractTreeLikelihood::ConstNoPartitionSiteModelDescription:

Public Member Functions
	ConstNoPartitionSiteModelDescription (std::shared_ptr< const TransitionModelInterface > model, const std::vector< int > nodesId)
	ConstNoPartitionSiteModelDescription (const ConstNoPartitionSiteModelDescription &smd)
ConstNoPartitionSiteModelDescription &	operator= (const ConstNoPartitionSiteModelDescription &smd)
std::shared_ptr< const TransitionModelInterface >	getModel () const override
const TransitionModelInterface &	model () const override
std::shared_ptr< const SubstitutionModelInterface >	getSubstitutionModel () const override
const SubstitutionModelInterface &	substitutionModel () const override
BranchIterator *	getNewBranchIterator () const override

Private Attributes
std::shared_ptr< const TransitionModelInterface >	model_
std::vector< int >	nodesId_

Detailed Description

Definition at line 165 of file AbstractTreeLikelihood.h.

Constructor & Destructor Documentation

ConstNoPartitionSiteModelDescription() [1/2]

bpp::AbstractTreeLikelihood::ConstNoPartitionSiteModelDescription::ConstNoPartitionSiteModelDescription ( std::shared_ptr< const TransitionModelInterface >  model, const std::vector< int >  nodesId  )

inline

Definition at line 173 of file AbstractTreeLikelihood.h.

ConstNoPartitionSiteModelDescription() [2/2]

bpp::AbstractTreeLikelihood::ConstNoPartitionSiteModelDescription::ConstNoPartitionSiteModelDescription ( const ConstNoPartitionSiteModelDescription &  smd )

inline

Definition at line 176 of file AbstractTreeLikelihood.h.

Member Function Documentation

getModel()

std::shared_ptr<const TransitionModelInterface> bpp::AbstractTreeLikelihood::ConstNoPartitionSiteModelDescription::getModel ( ) const

inlineoverridevirtual

Implements bpp::TreeLikelihoodInterface::ConstSiteModelDescription.

Definition at line 189 of file AbstractTreeLikelihood.h.

References model_.

getNewBranchIterator()

BranchIterator* bpp::AbstractTreeLikelihood::ConstNoPartitionSiteModelDescription::getNewBranchIterator ( ) const

inlineoverridevirtual

Implements bpp::TreeLikelihoodInterface::ConstSiteModelDescription.

Definition at line 202 of file AbstractTreeLikelihood.h.

References nodesId_.

getSubstitutionModel()

std::shared_ptr<const SubstitutionModelInterface> bpp::AbstractTreeLikelihood::ConstNoPartitionSiteModelDescription::getSubstitutionModel ( ) const

inlineoverridevirtual

Implements bpp::TreeLikelihoodInterface::ConstSiteModelDescription.

Definition at line 192 of file AbstractTreeLikelihood.h.

References model_.

model()

const TransitionModelInterface& bpp::AbstractTreeLikelihood::ConstNoPartitionSiteModelDescription::model ( ) const

inlineoverridevirtual

Implements bpp::TreeLikelihoodInterface::ConstSiteModelDescription.

Definition at line 190 of file AbstractTreeLikelihood.h.

References model_.

operator=()

ConstNoPartitionSiteModelDescription& bpp::AbstractTreeLikelihood::ConstNoPartitionSiteModelDescription::operator= ( const ConstNoPartitionSiteModelDescription &  smd )

inline

Definition at line 181 of file AbstractTreeLikelihood.h.

References model_, and nodesId_.

substitutionModel()

const SubstitutionModelInterface& bpp::AbstractTreeLikelihood::ConstNoPartitionSiteModelDescription::substitutionModel ( ) const

inlineoverridevirtual

Implements bpp::TreeLikelihoodInterface::ConstSiteModelDescription.

Definition at line 197 of file AbstractTreeLikelihood.h.

Member Data Documentation

model_

std::shared_ptr<const TransitionModelInterface> bpp::AbstractTreeLikelihood::ConstNoPartitionSiteModelDescription::model_

private

Definition at line 169 of file AbstractTreeLikelihood.h.

Referenced by getModel(), getSubstitutionModel(), model(), and operator=().

nodesId_

std::vector<int> bpp::AbstractTreeLikelihood::ConstNoPartitionSiteModelDescription::nodesId_

private

Definition at line 170 of file AbstractTreeLikelihood.h.

Referenced by getNewBranchIterator(), and operator=().

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The documentation for this class was generated from the following file:

• Bpp/Phyl/Legacy/Likelihood/AbstractTreeLikelihood.h