bpp::TreeLikelihoodInterface::ConstSiteModelDescription Class Reference

A pair of SubstitutionModel / BranchIterator. More...

#include <Bpp/Phyl/Legacy/Likelihood/TreeLikelihood.h>

Inheritance diagram for bpp::TreeLikelihoodInterface::ConstSiteModelDescription:

Public Member Functions
virtual	~ConstSiteModelDescription ()
virtual const TransitionModelInterface &	model () const =0
virtual std::shared_ptr< const TransitionModelInterface >	getModel () const =0
virtual const SubstitutionModelInterface &	substitutionModel () const =0
virtual std::shared_ptr< const SubstitutionModelInterface >	getSubstitutionModel () const =0
virtual BranchIterator *	getNewBranchIterator () const =0

Detailed Description

A pair of SubstitutionModel / BranchIterator.

Definition at line 106 of file TreeLikelihood.h.

Constructor & Destructor Documentation

~ConstSiteModelDescription()

virtual bpp::TreeLikelihoodInterface::ConstSiteModelDescription::~ConstSiteModelDescription ( )

inlinevirtual

Definition at line 109 of file TreeLikelihood.h.

Member Function Documentation

getModel()

virtual std::shared_ptr< const TransitionModelInterface > bpp::TreeLikelihoodInterface::ConstSiteModelDescription::getModel ( ) const

pure virtual

Implemented in bpp::AbstractTreeLikelihood::ConstNoPartitionSiteModelDescription.

getNewBranchIterator()

virtual BranchIterator * bpp::TreeLikelihoodInterface::ConstSiteModelDescription::getNewBranchIterator ( ) const

pure virtual

Implemented in bpp::AbstractTreeLikelihood::ConstNoPartitionSiteModelDescription.

getSubstitutionModel()

virtual std::shared_ptr< const SubstitutionModelInterface > bpp::TreeLikelihoodInterface::ConstSiteModelDescription::getSubstitutionModel ( ) const

pure virtual

Implemented in bpp::AbstractTreeLikelihood::ConstNoPartitionSiteModelDescription.

model()

virtual const TransitionModelInterface & bpp::TreeLikelihoodInterface::ConstSiteModelDescription::model ( ) const

pure virtual

Implemented in bpp::AbstractTreeLikelihood::ConstNoPartitionSiteModelDescription.

substitutionModel()

virtual const SubstitutionModelInterface & bpp::TreeLikelihoodInterface::ConstSiteModelDescription::substitutionModel ( ) const

pure virtual

Implemented in bpp::AbstractTreeLikelihood::ConstNoPartitionSiteModelDescription.

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The documentation for this class was generated from the following file:

• Bpp/Phyl/Legacy/Likelihood/TreeLikelihood.h