bpp::IOPhymlPairedSiteLikelihoods Class Reference

This class provides input for the Phyml paired-site likelihoods format. More...

#include <Bpp/Phyl/Legacy/Io/IoPairedSiteLikelihoods.h>

Inheritance diagram for bpp::IOPhymlPairedSiteLikelihoods:

Collaboration diagram for bpp::IOPhymlPairedSiteLikelihoods:

Public Member Functions
virtual const std::string	getDataType () const=0
virtual const std::string	getFormatName () const=0
virtual const std::string	getFormatDescription () const=0

Static Public Member Functions
static std::vector< double >	readPairedSiteLikelihoods (std::istream &is)
	Read paired-site likelihoods from a Phyml-formatted stream. More...
static std::vector< double >	readPairedSiteLikelihoods (const std::string &path)
	Read Phyml paired-site likelihoods from a Phyml-formatted file. More...

Detailed Description

This class provides input for the Phyml paired-site likelihoods format.

Author

Nicolas Rochette

Definition at line 76 of file IoPairedSiteLikelihoods.h.

Member Function Documentation

readPairedSiteLikelihoods() [1/2]

vector< double > IOPhymlPairedSiteLikelihoods::readPairedSiteLikelihoods ( const std::string &  path )

static

Read Phyml paired-site likelihoods from a Phyml-formatted file.

Exceptions

Exception

If the format is not recognized.

Definition at line 235 of file IoPairedSiteLikelihoods.cpp.

readPairedSiteLikelihoods() [2/2]

vector< double > IOPhymlPairedSiteLikelihoods::readPairedSiteLikelihoods ( std::istream &  is )

static

Read paired-site likelihoods from a Phyml-formatted stream.

Exceptions

Exception

If the format is not recognized.

Definition at line 195 of file IoPairedSiteLikelihoods.cpp.

References bpp::numeric::log().

---

The documentation for this class was generated from the following files:

• Bpp/Phyl/Legacy/Io/IoPairedSiteLikelihoods.h
• Bpp/Phyl/Legacy/Io/IoPairedSiteLikelihoods.cpp