IoPairedSiteLikelihoods.h

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// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
#ifndef BPP_PHYL_LEGACY_IO_IOPAIREDSITELIKELIHOODS_H
#define BPP_PHYL_LEGACY_IO_IOPAIREDSITELIKELIHOODS_H
 
 
// From the STL:
#include <vector>
#include <string>
#include <sstream>
 
// From Bio++
#include <Bpp/Io/IoFormat.h>
#include "../Likelihood/PairedSiteLikelihoods.h"
 
namespace bpp
{
class IOPairedSiteLikelihoods : public virtual IOFormat
{};
 
 
class IOTreepuzzlePairedSiteLikelihoods : public virtual IOPairedSiteLikelihoods
{
public:
  static PairedSiteLikelihoods readPairedSiteLikelihoods(std::istream& is);
 
  static PairedSiteLikelihoods readPairedSiteLikelihoods(const std::string& path);
 
  static void writePairedSiteLikelihoods(const PairedSiteLikelihoods& psl, std::ostream& os, const std::string& delim = "\t");
 
  static void writePairedSiteLikelihoods(const PairedSiteLikelihoods& psl, const std::string& path, const std::string& delim = "\t");
};
 
 
class IOPhymlPairedSiteLikelihoods : public virtual IOPairedSiteLikelihoods
{
public:
  static std::vector<double> readPairedSiteLikelihoods(std::istream& is);
 
  static std::vector<double> readPairedSiteLikelihoods(const std::string& path);
};
} // namespace bpp
#endif // BPP_PHYL_LEGACY_IO_IOPAIREDSITELIKELIHOODS_H