Here is a list of all class members with links to the classes they belong to:

- b -

• B_ : bpp::AbstractCodonBGCSubstitutionModel , bpp::gBGC
• b_ : bpp::GTR
• backupFile : bpp::OptimizationTools::OptimizationOptions
• BackwardHmmLikelihood_DF() : bpp::BackwardHmmLikelihood_DF
• backwardLik_ : bpp::HmmLikelihood_DF
• BackwardLikelihoodTree() : bpp::BackwardLikelihoodTree
• Base : bpp::ExtendedFloatEigen< R, C, EigenType >
• BasicTreeDrawingDisplayControler() : bpp::BasicTreeDrawingDisplayControler
• beforeDrawBranch() : bpp::TreeDrawingListener , bpp::TreeDrawingListenerAdapter
• beforeDrawNode() : bpp::TreeDrawingListener , bpp::TreeDrawingListenerAdapter
• beforeDrawTree() : bpp::TreeDrawingListener , bpp::TreeDrawingListenerAdapter
• begin() : bpp::TreeIterator
• belongsTo() : bpp::AbstractTreeDrawing
• bestRootPosition_() : bpp::PhyloTreeTools , bpp::TreeTools
• beta_ : bpp::AbstractCodonAARateSubstitutionModel , bpp::AbstractCodonDistanceSubstitutionModel , bpp::L95 , bpp::RN95 , bpp::RN95s , bpp::SSR
• BETTER : bpp::NNITopologySearch
• biggest_normalized_radix_power : bpp::ExtendedFloat
• biggest_normalized_value : bpp::ExtendedFloat
• biggest_repr_radix_power : bpp::ExtendedFloat
• BINARY : bpp::BppOSubstitutionModelFormat
• BinarySubstitutionModel() : bpp::BinarySubstitutionModel
• BioNJ() : bpp::BioNJ
• BipartitionList() : bpp::BipartitionList
• bipartitionOccurrences() : bpp::TreeTools
• BipartitionTools() : bpp::BipartitionTools
• bit0() : bpp::BipartitionTools
• bit1() : bpp::BipartitionTools
• bitAnd() : bpp::BipartitionTools
• bitBipartitionList_ : bpp::BipartitionList
• bitNot() : bpp::BipartitionTools
• bitOr() : bpp::BipartitionTools
• blt : bpp::LikelihoodCalculationSingleProcess::RateCategoryTrees
• bMatrices_ : bpp::DecompositionMethods , bpp::UniformizationSubstitutionCount
• bootstrap() : bpp::PairedSiteLikelihoods
• BOOTSTRAP : bpp::PhyloTreeTools
• bootstrap : bpp::TreeTemplateTools::Element
• BOOTSTRAP : bpp::TreeTools
• bootstrapPropertyName_ : bpp::Newick
• BootstrapValuesTreeDrawingListener() : bpp::BootstrapValuesTreeDrawingListener
• bppLik_ : bpp::CWiseApply< R, T, F >
• BPPO_FORMAT : bpp::IOFrequencySetFactory , bpp::IOSubstitutionModelFactory
• BppOBranchModelFormat() : bpp::BppOBranchModelFormat
• BppOFrequencySetFormat() : bpp::BppOFrequencySetFormat
• BppOMultiTreeReaderFormat() : bpp::BppOMultiTreeReaderFormat
• BppOMultiTreeWriterFormat() : bpp::BppOMultiTreeWriterFormat
• BppORateDistributionFormat() : bpp::BppORateDistributionFormat
• BppOSubstitutionModelFormat() : bpp::BppOSubstitutionModelFormat
• BppOTransitionModelFormat() : bpp::BppOTransitionModelFormat
• BppOTreeReaderFormat() : bpp::BppOTreeReaderFormat
• BppOTreeWriterFormat() : bpp::BppOTreeWriterFormat
• BppPhylogeneticsApplication() : bpp::BppPhylogeneticsApplication
• branch_ : bpp::PhyloBranchPException
• BranchedModelSet() : bpp::BranchedModelSet
• branchId_ : bpp::PhyloBranchException
• branchLengths_ : bpp::PhyloStatistics
• BranchLengthsTreeDrawingListener() : bpp::BranchLengthsTreeDrawingListener
• BranchLikelihood() : bpp::BranchLikelihood
• branchModelDescription_ : bpp::AbstractTreeLikelihood::ConstNoPartitionBranchModelIterator
• BranchModelInterface() : bpp::BranchModelInterface
• branchProperties_ : bpp::Node
• brentOptimizer_ : bpp::NNIHomogeneousTreeLikelihood
• brLen_ : bpp::LegacyOptimizationTools::ScaleFunction
• brlen_ : bpp::LikelihoodCalculationOnABranch::RateCategoryEdge , bpp::ProcessEdge
• brLenConstraint_ : bpp::AbstractHomogeneousTreeLikelihood , bpp::AbstractNonHomogeneousTreeLikelihood , bpp::ParametrizablePhyloTree
• brLenNNIParams_ : bpp::NNIHomogeneousTreeLikelihood
• brLenNNIValues_ : bpp::NNIHomogeneousTreeLikelihood
• brLenParameters_ : bpp::AbstractHomogeneousTreeLikelihood , bpp::AbstractNonHomogeneousTreeLikelihood
• brLikFunction_ : bpp::NNIHomogeneousTreeLikelihood
• brprob_ : bpp::ProcessEdge
• build() : bpp::ForwardHmmD2Likelihood_DF , bpp::ForwardHmmDLikelihood_DF , bpp::ForwardHmmLikelihood_DF
• buildBipartitionPair() : bpp::BipartitionTools
• buildBitBipartitions() : bpp::BipartitionList
• buildDistanceTree() : bpp::OptimizationTools
• buildFollowingPath_() : bpp::ProcessComputationTree
• buildFollowingScenario_() : bpp::ProcessComputationTree
• buildFromPhyloTree() : bpp::TreeTemplateTools
• buildFromTreeTemplate() : bpp::PhyloTreeTools