- t -

• tag : bpp::Nhx::Property
• targetDimension_ : bpp::BackwardHmmLikelihood_DF , bpp::CombineDeltaShifted< T > , bpp::CondLikelihood , bpp::ConstantOne< T > , bpp::ConstantZero< T > , bpp::Convert< R, F > , bpp::CWiseAdd< R, T > , bpp::CWiseAdd< R, ReductionOf< T > > , bpp::CWiseAdd< R, std::tuple< T0, T1 > > , bpp::CWiseApply< R, T, F > , bpp::CWiseCompound< R, ReductionOf< T > > , bpp::CWiseConstantPow< T > , bpp::CWiseDiv< R, std::tuple< T0, T1 > > , bpp::CWiseExp< T > , bpp::CWiseFill< R, T > , bpp::CWiseInverse< T > , bpp::CWiseLog< T > , bpp::CWiseMatching< R, ReductionOf< T > > , bpp::CWiseMean< R, ReductionOf< T >, P > , bpp::CWiseMean< R, ReductionOf< T >, ReductionOf< P > > , bpp::CWiseMul< R, ReductionOf< T > > , bpp::CWiseMul< R, std::tuple< T0, T1 > > , bpp::CWiseNegate< T > , bpp::CWisePattern< R > , bpp::CWiseSub< R, std::tuple< T0, T1 > > , bpp::EquilibriumFrequenciesFromModel , bpp::EquilibriumFrequenciesFromTransitionMatrix , bpp::ForwardHmmD2Likelihood_DF , bpp::ForwardHmmDLikelihood_DF , bpp::ForwardHmmLikelihood_DF , bpp::FrequenciesFromFrequencySet , bpp::FrequenciesFromSimplex , bpp::Identity< R > , bpp::MatrixProduct< R, T0, T1 > , bpp::ShiftDelta< T > , bpp::TransitionFunctionFromModel , bpp::TransitionMatrixFromModel , bpp::TransitionMatrixFromTransitionMatrix
• td_ : bpp::DrawBranchEvent , bpp::DrawNodeEvent , bpp::DrawTreeEvent
• temp_ : bpp::SumOfLogarithms< F >
• templateTree_ : bpp::NonHomogeneousSequenceSimulator
• theta1_ : bpp::F81 , bpp::F84 , bpp::GTR , bpp::HKY85 , bpp::TN93
• theta2_ : bpp::F81 , bpp::F84 , bpp::GTR , bpp::HKY85 , bpp::TN93
• theta_ : bpp::F81 , bpp::F84 , bpp::GTR , bpp::HKY85 , bpp::L95 , bpp::SSR , bpp::T92 , bpp::TN93
• time : bpp::PGMAInfos
• times_ : bpp::MutationPath
• tl_ : bpp::GlobalClockTreeLikelihoodFunctionWrapper , bpp::LegacyOptimizationTools::ScaleFunction
• tmp_ : bpp::ExtendedFloatCol< R, C, EigenType > , bpp::ExtendedFloatRow< R, C, EigenType > , bpp::OneJumpSubstitutionCount
• tmpMat_ : bpp::AbstractSubstitutionModel
• to_ : bpp::MixtureOfATransitionModel
• tolerance : bpp::OptimizationTools::OptimizationOptions
• tolerance_ : bpp::NNITopologyListener2 , bpp::NNITopologyListener
• topoListeners_ : bpp::NNITopologySearch
• topoSearch_ : bpp::NNITopologyListener2 , bpp::NNITopologyListener
• totalDepth_ : bpp::CladogramPlot , bpp::PhylogramPlot
• totalTime_ : bpp::MutationPath
• tPpalAxes_ : bpp::MvaFrequencySet
• tr_ : bpp::AbstractDFPSubstitutionModel
• transitionMatrix_ : bpp::ProcessEdge
• tree_ : bpp::AbstractAgglomerativeDistanceMethod , bpp::AbstractTreeDrawing , bpp::AbstractTreeLikelihood , bpp::AbstractTreeLikelihoodData , bpp::AbstractTreeParsimonyData , bpp::LegacyAbstractMapping , bpp::LegacyMarginalAncestralStateReconstruction , bpp::MarginalAncestralReconstruction , bpp::NonHomogeneousSequenceSimulator , bpp::PhyloTreeException , bpp::SimpleSubstitutionProcessSiteSimulator , bpp::SiteSimulationResult , bpp::StochasticMapping , bpp::TreeException , bpp::TreeIterator
• treeColl_ : bpp::CollectionNodes , bpp::SubstitutionProcessCollection
• treeLikelihoodsContainer_ : bpp::DRHomogeneousMixedTreeLikelihood , bpp::RHomogeneousMixedTreeLikelihood
• treeNode_ : bpp::LikelihoodCalculationSingleProcess::ProcessNodes
• treePtr_ : bpp::AbstractTreeParsimonyScore
• tref_ : bpp::MultinomialFromTransitionModel , bpp::TransitionFromTransitionModel
• trr_ : bpp::AbstractDFPSubstitutionModel
• trv_ : bpp::AbstractDFPSubstitutionModel
• tsub_ : bpp::AbstractDFPSubstitutionModel
• tvv_ : bpp::AbstractDFPSubstitutionModel
• type : bpp::Nhx::Property , bpp::NumericalDerivativeConfiguration
• types_ : bpp::GeneralSubstitutionRegister , bpp::KrKcSubstitutionRegister