- t -

• tag : bpp::Nhx::Property
• targetDimension_ : bpp::BackwardHmmLikelihood_DF, bpp::CombineDeltaShifted< T >, bpp::CondLikelihood, bpp::ConstantOne< T >, bpp::ConstantZero< T >, bpp::Convert< R, F >, bpp::CWiseAdd< R, T >, bpp::CWiseAdd< R, ReductionOf< T > >, bpp::CWiseAdd< R, std::tuple< T0, T1 > >, bpp::CWiseApply< R, T, F >, bpp::CWiseCompound< R, ReductionOf< T > >, bpp::CWiseConstantPow< T >, bpp::CWiseDiv< R, std::tuple< T0, T1 > >, bpp::CWiseExp< T >, bpp::CWiseFill< R, T >, bpp::CWiseInverse< T >, bpp::CWiseLog< T >, bpp::CWiseMatching< R, ReductionOf< T > >, bpp::CWiseMean< R, ReductionOf< T >, P >, bpp::CWiseMean< R, ReductionOf< T >, ReductionOf< P > >, bpp::CWiseMul< R, ReductionOf< T > >, bpp::CWiseMul< R, std::tuple< T0, T1 > >, bpp::CWiseNegate< T >, bpp::CWisePattern< R >, bpp::CWiseSub< R, std::tuple< T0, T1 > >, bpp::EquilibriumFrequenciesFromModel, bpp::EquilibriumFrequenciesFromTransitionMatrix, bpp::ForwardHmmD2Likelihood_DF, bpp::ForwardHmmDLikelihood_DF, bpp::ForwardHmmLikelihood_DF, bpp::FrequenciesFromFrequencySet, bpp::FrequenciesFromSimplex, bpp::Identity< R >, bpp::MatrixProduct< R, T0, T1 >, bpp::ShiftDelta< T >, bpp::TransitionFunctionFromModel, bpp::TransitionMatrixFromModel, bpp::TransitionMatrixFromTransitionMatrix
• td_ : bpp::DrawBranchEvent, bpp::DrawNodeEvent, bpp::DrawTreeEvent
• temp_ : bpp::SumOfLogarithms< F >
• templateTree_ : bpp::NonHomogeneousSequenceSimulator
• theta1_ : bpp::F81, bpp::F84, bpp::GTR, bpp::HKY85, bpp::TN93
• theta2_ : bpp::F81, bpp::F84, bpp::GTR, bpp::HKY85, bpp::TN93
• theta_ : bpp::F81, bpp::F84, bpp::GTR, bpp::HKY85, bpp::L95, bpp::SSR, bpp::T92, bpp::TN93
• time : bpp::PGMAInfos
• times_ : bpp::MutationPath
• tl_ : bpp::GlobalClockTreeLikelihoodFunctionWrapper, bpp::LegacyOptimizationTools::ScaleFunction
• tmp_ : bpp::ExtendedFloatCol< R, C, EigenType >, bpp::ExtendedFloatRow< R, C, EigenType >, bpp::OneJumpSubstitutionCount
• tmpMat_ : bpp::AbstractSubstitutionModel
• to_ : bpp::MixtureOfATransitionModel
• tolerance : bpp::OptimizationTools::OptimizationOptions
• tolerance_ : bpp::NNITopologyListener2, bpp::NNITopologyListener
• topoListeners_ : bpp::NNITopologySearch
• topoSearch_ : bpp::NNITopologyListener2, bpp::NNITopologyListener
• totalDepth_ : bpp::CladogramPlot, bpp::PhylogramPlot
• totalTime_ : bpp::MutationPath
• tPpalAxes_ : bpp::MvaFrequencySet
• tr_ : bpp::AbstractDFPSubstitutionModel
• transitionMatrix_ : bpp::ProcessEdge
• tree_ : bpp::AbstractAgglomerativeDistanceMethod, bpp::AbstractTreeDrawing, bpp::AbstractTreeLikelihood, bpp::AbstractTreeLikelihoodData, bpp::AbstractTreeParsimonyData, bpp::LegacyAbstractMapping, bpp::LegacyMarginalAncestralStateReconstruction, bpp::MarginalAncestralReconstruction, bpp::NonHomogeneousSequenceSimulator, bpp::PhyloTreeException, bpp::SimpleSubstitutionProcessSiteSimulator, bpp::SiteSimulationResult, bpp::StochasticMapping, bpp::TreeException, bpp::TreeIterator
• treeColl_ : bpp::CollectionNodes, bpp::SubstitutionProcessCollection
• treeLikelihoodsContainer_ : bpp::DRHomogeneousMixedTreeLikelihood, bpp::RHomogeneousMixedTreeLikelihood
• treeNode_ : bpp::LikelihoodCalculationSingleProcess::ProcessNodes
• treePtr_ : bpp::AbstractTreeParsimonyScore
• tref_ : bpp::MultinomialFromTransitionModel, bpp::TransitionFromTransitionModel
• trr_ : bpp::AbstractDFPSubstitutionModel
• trv_ : bpp::AbstractDFPSubstitutionModel
• tsub_ : bpp::AbstractDFPSubstitutionModel
• tvv_ : bpp::AbstractDFPSubstitutionModel
• type : bpp::Nhx::Property, bpp::NumericalDerivativeConfiguration
• types_ : bpp::GeneralSubstitutionRegister, bpp::KrKcSubstitutionRegister