PolymorphismMultiGContainerTools.h

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// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
#ifndef _POLYMORPHISMMULTIGCONTAINERTOOLS_H_
#define _POLYMORPHISMMULTIGCONTAINERTOOLS_H_
 
// From the STL
#include <set>
 
// From the PolGenLib library
#include "PolymorphismMultiGContainer.h"
 
#include <Bpp/Numeric/Random/RandomTools.h>
 
namespace bpp
{
class PolymorphismMultiGContainerTools
{
public:
  static std::unique_ptr<PolymorphismMultiGContainer> permuteMultiG(const PolymorphismMultiGContainer& pmgc);
 
  static std::unique_ptr<PolymorphismMultiGContainer> permuteMonoG(const PolymorphismMultiGContainer& pmgc, const std::set<size_t>& groups);
 
  static std::unique_ptr<PolymorphismMultiGContainer> permuteIntraGroupMonoG(const PolymorphismMultiGContainer& pmgc, const std::set<size_t>& groups);
 
  static std::unique_ptr<PolymorphismMultiGContainer> permuteAlleles(const PolymorphismMultiGContainer& pmgc, const std::set<size_t>& groups);
 
  static std::unique_ptr<PolymorphismMultiGContainer> permuteIntraGroupAlleles(const PolymorphismMultiGContainer& pmgc, const std::set<size_t>& groups);
 
  static std::unique_ptr<PolymorphismMultiGContainer> extractGroups(const PolymorphismMultiGContainer& pmgc, const std::set<size_t>& groups);
};
} // end of namespace bpp;
 
#endif // _POLYMORPHISMMULTIGCONTAINERTOOLS_H_