The MonolocusGenotype virtual class. More...
#include <Bpp/PopGen/MonolocusGenotype.h>
Inheritance diagram for bpp::MonolocusGenotypeInterface:
Collaboration diagram for bpp::MonolocusGenotypeInterface:
Public Member Functions | |
| MonolocusGenotypeInterface * | clone () const override=0 |
| virtual std::vector< size_t > | getAlleleIndex () const =0 |
| Get the alleles' index. More... | |
Detailed Description
The MonolocusGenotype virtual class.
A MonolocusGenotype contains the Alleles' keys defined in a Locus object. This keys are returned as size_tegers. This class is an interface for all monolocus genotypes.
Definition at line 24 of file MonolocusGenotype.h.
Member Function Documentation
◆ clone()
|
overridepure virtual |
Implements bpp::Clonable.
Implemented in bpp::MultiAlleleMonolocusGenotype, bpp::MonoAlleleMonolocusGenotype, and bpp::BiAlleleMonolocusGenotype.
Referenced by bpp::MultilocusGenotype::MultilocusGenotype(), bpp::PolymorphismMultiGContainerTools::permuteIntraGroupMonoG(), bpp::PolymorphismMultiGContainerTools::permuteMonoG(), and bpp::MultilocusGenotype::setMonolocusGenotype().
◆ getAlleleIndex()
|
pure virtual |
Get the alleles' index.
The alleles' index are the position of the AlleleInfo in a LocusInfo object. If no LocusInfo is used, the index are just numbers to identify the alleles.
- Returns
- A vector of size_t.
The size of the vector corresponds to the number of alleles at this locus.
Implemented in bpp::MultiAlleleMonolocusGenotype, bpp::MonoAlleleMonolocusGenotype, and bpp::BiAlleleMonolocusGenotype.
Referenced by bpp::MultilocusGenotypeStatistics::countBiAllelicForGroups(), bpp::MultilocusGenotypeStatistics::countHeterozygousForGroups(), bpp::MultilocusGenotypeStatistics::getAllelesMapForGroups(), bpp::MultilocusGenotypeStatistics::getHeterozygousFrqForGroups(), bpp::PolymorphismMultiGContainerTools::permuteAlleles(), bpp::PolymorphismMultiGContainerTools::permuteIntraGroupAlleles(), and bpp::PopgenlibIO::write().
The documentation for this class was generated from the following file:
- Bpp/PopGen/MonolocusGenotype.h
