Likelihood Directory Reference

Directory dependency graph for Likelihood:

Directories
directory	DataFlow
directory	PhyloLikelihoods

Files
file	AbstractAutonomousSubstitutionProcess.cpp [code]
file	AbstractAutonomousSubstitutionProcess.h [code]
file	AbstractSubstitutionProcess.cpp [code]
file	AbstractSubstitutionProcess.h [code]
file	AutoCorrelationSequenceEvolution.cpp [code]
file	AutoCorrelationSequenceEvolution.h [code]
file	AutonomousSubstitutionProcess.h [code]
file	HmmEmissionProbabilities_Eigen.h [code]
file	HmmProcessAlphabet.h [code]
file	HmmSequenceEvolution.cpp [code]
file	HmmSequenceEvolution.h [code]
file	MarginalAncestralReconstruction.cpp [code]
file	MarginalAncestralReconstruction.h [code]
file	MixtureSequenceEvolution.cpp [code]
file	MixtureSequenceEvolution.h [code]
file	ModelPath.cpp [code]
file	ModelPath.h [code]
file	ModelScenario.cpp [code]
file	ModelScenario.h [code]
file	MultiProcessSequenceEvolution.cpp [code]
file	MultiProcessSequenceEvolution.h [code]
file	NonHomogeneousSubstitutionProcess.cpp [code]
file	NonHomogeneousSubstitutionProcess.h [code]
file	OneProcessSequenceEvolution.cpp [code]
file	OneProcessSequenceEvolution.h [code]
file	ParametrizablePhyloTree.cpp [code]
file	ParametrizablePhyloTree.h [code]
file	PartitionSequenceEvolution.cpp [code]
file	PartitionSequenceEvolution.h [code]
file	ProcessComputationTree.cpp [code]
file	ProcessComputationTree.h [code]
file	RateAcrossSitesSubstitutionProcess.cpp [code]
file	RateAcrossSitesSubstitutionProcess.h [code]
file	SequenceEvolution.h [code]
file	SimpleSubstitutionProcess.cpp [code]
file	SimpleSubstitutionProcess.h [code]
file	SitePartition.h [code]
file	SubstitutionProcess.h [code]
file	SubstitutionProcessCollection.cpp [code]
file	SubstitutionProcessCollection.h [code]
file	SubstitutionProcessCollectionMember.cpp [code]
file	SubstitutionProcessCollectionMember.h [code]