SitePartition.h

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// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
#ifndef BPP_PHYL_LIKELIHOOD_SITEPARTITION_H
#define BPP_PHYL_LIKELIHOOD_SITEPARTITION_H
 
 
namespace bpp
{
class SitePartition :
  public virtual Clonable
{
public:
  SitePartition* clone() const = 0;
 
public:
  virtual size_t getNumberOfPartitions() const = 0;
  virtual size_t getNumberOfPatternsForPartition(size_t partitionIndex) const = 0;
};
 
class TrivialSitePartition :
  public virtual SitePartition
{
private:
  size_t nbDistinctSites_;
 
public:
  TrivialSitePartition(size_t nbDistinctSites) : nbDistinctSites_(nbDistinctSites) {}
 
  TrivialSitePartition* clone() const { return new TrivialSitePartition(*this); }
 
public:
  size_t getNumberOfPartitions() const { return 1; }
  size_t getNumberOfPatternsForPartition(size_t partitionIndex) const { return nbDistinctSites_; }
};
} // end of namespace bpp
#endif // BPP_PHYL_LIKELIHOOD_SITEPARTITION_H