BiAlleleMonolocusGenotype.h

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// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
// Secured inclusion of header's file
#ifndef _BIALLELEMONOLOCUSGENOTYPE_H_
#define _BIALLELEMONOLOCUSGENOTYPE_H_
 
// From STL
#include <vector>
 
#include <Bpp/Exceptions.h>
 
// From local
#include "MonolocusGenotype.h"
 
namespace bpp
{
class BiAlleleMonolocusGenotype :
  public virtual MonolocusGenotypeInterface
{
private:
  std::vector<size_t> alleleIndex_;
 
public:
  // Constructors and destructor
  BiAlleleMonolocusGenotype(size_t firstAlleleIndex,
      size_t secondAlleleIndex);
 
  BiAlleleMonolocusGenotype(std::vector<size_t> alleleIndex);
 
  BiAlleleMonolocusGenotype(const BiAlleleMonolocusGenotype& bmg);
 
  virtual ~BiAlleleMonolocusGenotype();
 
public:
  BiAlleleMonolocusGenotype& operator=(const BiAlleleMonolocusGenotype& bmg);
 
  bool operator==(const BiAlleleMonolocusGenotype& bmg) const;
 
  size_t getFirstAlleleIndex() const
  {
    return alleleIndex_[0];
  }
 
  size_t getSecondAlleleIndex() const
  {
    return alleleIndex_[1];
  }
 
  bool isHomozygous() const
  {
    return alleleIndex_[0] == alleleIndex_[1];
  }
 
  std::vector<size_t> getAlleleIndex() const override
  {
    return alleleIndex_;
  }
 
  BiAlleleMonolocusGenotype* clone() const override
  {
    return new BiAlleleMonolocusGenotype(*this);
  }
};
} // end of namespace bpp;
 
#endif // _BIALLELEMONOLOCUSGENOTYPE_H_