AncestralStateReconstruction.h

Go to the documentation of this file.

// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
#ifndef BPP_PHYL_ANCESTRALSTATERECONSTRUCTION_H
#define BPP_PHYL_ANCESTRALSTATERECONSTRUCTION_H
 
 
// From SeqLib:
#include <Bpp/Seq/Sequence.h>
#include <Bpp/Seq/Container/SiteContainer.h>
#include <Bpp/Seq/Container/AlignedSequenceContainer.h>
 
// From the STL:
#include <vector>
#include <map>
 
namespace bpp
{
class Node;
 
class AncestralStateReconstruction
{
public:
  AncestralStateReconstruction() {}
  virtual ~AncestralStateReconstruction() {}
 
public:
  virtual std::vector<size_t> getAncestralStatesForNode(uint nodeId) const = 0;
 
  virtual std::map<uint, std::vector<size_t>> getAllAncestralStates() const = 0;
 
  virtual std::unique_ptr<Sequence> getAncestralSequenceForNode(uint nodeId) const = 0;
 
  virtual std::unique_ptr<AlignedSequenceContainer> getAncestralSequences() const = 0;
};
} // end of namespace bpp.
#endif // BPP_PHYL_ANCESTRALSTATERECONSTRUCTION_H