- w -

• WAG01() : bpp::WAG01
• weightsHaveChanged() : bpp::AbstractWeightedSubstitutionCount , bpp::DecompositionSubstitutionCount , bpp::NaiveSubstitutionCount , bpp::UniformizationSubstitutionCount
• WordFromIndependentFrequencySet() : bpp::WordFromIndependentFrequencySet
• WordFromUniqueFrequencySet() : bpp::WordFromUniqueFrequencySet
• WordSubstitutionModel() : bpp::WordSubstitutionModel
• worksWith() : bpp::HmmPhyloAlphabet , bpp::HmmProcessAlphabet
• WrappedModelInterface() : bpp::WrappedModelInterface
• WrappedSubstitutionModelInterface() : bpp::WrappedSubstitutionModelInterface
• WrappedTransitionModelInterface() : bpp::WrappedTransitionModelInterface
• write() : bpp::BppOSubstitutionModelFormat , bpp::OSubstitutionModel
• write_() : bpp::ExtendedNewick , bpp::Newick , bpp::NexusIOTree , bpp::Nhx
• writeDiscreteDistribution() : bpp::BppORateDistributionFormat
• writeFrequencySet() : bpp::BppOFrequencySetFormat , bpp::OFrequencySet
• writeMixed_() : bpp::BppOSubstitutionModelFormat
• writePairedSiteLikelihoods() : bpp::IOTreepuzzlePairedSiteLikelihoods
• writePhyloDAG() : bpp::AbstractOPhyloDAG , bpp::ExtendedNewick , bpp::OPhyloDAG
• writePhyloDAGs() : bpp::AbstractOMultiPhyloDAG , bpp::ExtendedNewick , bpp::OMultiPhyloDAG
• writePhyloTree() : bpp::AbstractOPhyloTree , bpp::Newick , bpp::NexusIOTree , bpp::Nhx , bpp::OPhyloTree
• writePhyloTrees() : bpp::AbstractOMultiPhyloTree , bpp::Newick , bpp::NexusIOTree , bpp::Nhx , bpp::OMultiPhyloTree , bpp::PhylogeneticsApplicationTools
• writeToStream() : bpp::LegacyRewardMappingTools , bpp::LegacySubstitutionMappingTools , bpp::RewardMappingTools , bpp::SubstitutionMappingTools
• writeTree() : bpp::AbstractOTree , bpp::Newick , bpp::NexusIOTree , bpp::Nhx , bpp::OTree , bpp::PhylogeneticsApplicationTools
• writeTrees() : bpp::AbstractOMultiTree , bpp::LegacyPhylogeneticsApplicationTools , bpp::Newick , bpp::NexusIOTree , bpp::Nhx , bpp::OMultiTree