bpp-phyl3
3.0.0
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- w -
WAG01() :
bpp::WAG01
weightsHaveChanged() :
bpp::AbstractWeightedSubstitutionCount
,
bpp::DecompositionSubstitutionCount
,
bpp::NaiveSubstitutionCount
,
bpp::UniformizationSubstitutionCount
WordFromIndependentFrequencySet() :
bpp::WordFromIndependentFrequencySet
WordFromUniqueFrequencySet() :
bpp::WordFromUniqueFrequencySet
WordSubstitutionModel() :
bpp::WordSubstitutionModel
worksWith() :
bpp::HmmPhyloAlphabet
,
bpp::HmmProcessAlphabet
WrappedModelInterface() :
bpp::WrappedModelInterface
WrappedSubstitutionModelInterface() :
bpp::WrappedSubstitutionModelInterface
WrappedTransitionModelInterface() :
bpp::WrappedTransitionModelInterface
write() :
bpp::BppOSubstitutionModelFormat
,
bpp::OSubstitutionModel
write_() :
bpp::ExtendedNewick
,
bpp::Newick
,
bpp::NexusIOTree
,
bpp::Nhx
writeDiscreteDistribution() :
bpp::BppORateDistributionFormat
writeFrequencySet() :
bpp::BppOFrequencySetFormat
,
bpp::OFrequencySet
writeMixed_() :
bpp::BppOSubstitutionModelFormat
writePairedSiteLikelihoods() :
bpp::IOTreepuzzlePairedSiteLikelihoods
writePhyloDAG() :
bpp::AbstractOPhyloDAG
,
bpp::ExtendedNewick
,
bpp::OPhyloDAG
writePhyloDAGs() :
bpp::AbstractOMultiPhyloDAG
,
bpp::ExtendedNewick
,
bpp::OMultiPhyloDAG
writePhyloTree() :
bpp::AbstractOPhyloTree
,
bpp::Newick
,
bpp::NexusIOTree
,
bpp::Nhx
,
bpp::OPhyloTree
writePhyloTrees() :
bpp::AbstractOMultiPhyloTree
,
bpp::Newick
,
bpp::NexusIOTree
,
bpp::Nhx
,
bpp::OMultiPhyloTree
,
bpp::PhylogeneticsApplicationTools
writeToStream() :
bpp::LegacyRewardMappingTools
,
bpp::LegacySubstitutionMappingTools
,
bpp::RewardMappingTools
,
bpp::SubstitutionMappingTools
writeTree() :
bpp::AbstractOTree
,
bpp::Newick
,
bpp::NexusIOTree
,
bpp::Nhx
,
bpp::OTree
,
bpp::PhylogeneticsApplicationTools
writeTrees() :
bpp::AbstractOMultiTree
,
bpp::LegacyPhylogeneticsApplicationTools
,
bpp::Newick
,
bpp::NexusIOTree
,
bpp::Nhx
,
bpp::OMultiTree
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