bpp::OSubstitutionModel Class Reference

General interface for distance matrix writers. More...

#include <Bpp/Phyl/Io/IoSubstitutionModel.h>

Inheritance diagram for bpp::OSubstitutionModel:

Collaboration diagram for bpp::OSubstitutionModel:

Public Member Functions
	OSubstitutionModel ()
virtual	~OSubstitutionModel ()
virtual void	write (const BranchModelInterface &model, OutputStream &out, std::map< std::string, std::string > &globalAliases, std::vector< std::string > &writtenNames) const =0
	Write a substitution model to a stream. More...
virtual const std::string	getDataType () const
virtual const std::string	getFormatName () const=0
virtual const std::string	getFormatDescription () const=0

Detailed Description

General interface for distance matrix writers.

Definition at line 77 of file IoSubstitutionModel.h.

Constructor & Destructor Documentation

OSubstitutionModel()

bpp::OSubstitutionModel::OSubstitutionModel ( )

inline

Definition at line 81 of file IoSubstitutionModel.h.

~OSubstitutionModel()

virtual bpp::OSubstitutionModel::~OSubstitutionModel ( )

inlinevirtual

Definition at line 82 of file IoSubstitutionModel.h.

Member Function Documentation

getDataType()

virtual const std::string bpp::IoSubstitutionModel::getDataType ( ) const

inlinevirtualinherited

Implements bpp::IOFormat.

Definition at line 35 of file IoSubstitutionModel.h.

write()

virtual void bpp::OSubstitutionModel::write ( const BranchModelInterface &  model, OutputStream &  out, std::map< std::string, std::string > &  globalAliases, std::vector< std::string > &  writtenNames  ) const

pure virtual

Write a substitution model to a stream.

Parameters

model	A substitution model object;
out	The output stream;
globalAliases	parameters linked to global alias.
writtenNames	is the vector of the written parameters so far [in, out];

Exceptions

Exception

if an error occurred.

Implemented in bpp::BppOSubstitutionModelFormat.

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The documentation for this class was generated from the following file:

• Bpp/Phyl/Io/IoSubstitutionModel.h