- m -

• m_ : bpp::LaplaceSubstitutionCount
• m_arg_ : bpp::CWiseCompound< R, ReductionOf< T > >::compound_functor , bpp::CWiseMatching< R, ReductionOf< T > >::matching_functor , bpp::CWisePattern< R >::pattern_functor
• main_ : bpp::RNonHomogeneousMixedTreeLikelihood
• mapEdgesIndexes_ : bpp::ForwardLikelihoodTree
• mapFact_ : bpp::MultinomialFromTransitionModel
• mapNodesIndexes_ : bpp::ForwardLikelihoodTree
• mapParNamesFromPmodel_ : bpp::AbstractBiblioTransitionModel
• mapping_ : bpp::LegacyProbabilisticRewardMapping , bpp::LegacyProbabilisticSubstitutionMapping
• mat_ : bpp::ExtendedFloatEigen< R, C, EigenType >
• matching_ : bpp::CWiseMatching< R, ReductionOf< T > >::matching_functor
• matrix_ : bpp::AbstractAgglomerativeDistanceMethod , bpp::GeneralSubstitutionRegister , bpp::HmmLikelihood_DF
• maxCorrection_ : bpp::PseudoNewtonOptimizer
• maximumBrLen_ : bpp::AbstractHomogeneousTreeLikelihood , bpp::AbstractNonHomogeneousTreeLikelihood , bpp::ParametrizablePhyloTree
• maxIndex_ : bpp::AbstractTreeLikelihood::SimpleSiteIterator
• mData_ : bpp::PartitionProcessPhyloLikelihood
• mDistToSubPro_ : bpp::SubstitutionProcessCollection
• MEDIAN : bpp::HierarchicalClustering
• message_ : bpp::TopologyChangeEvent
• messenger : bpp::OptimizationTools::OptimizationOptions
• messenger_ : bpp::NNITopologyListener2 , bpp::NNITopologyListener
• method_ : bpp::HierarchicalClustering
• mFreqToSubPro_ : bpp::SubstitutionProcessCollection
• mgmtStopCodon_ : bpp::CodonFromIndependentFrequencySet , bpp::CodonFromUniqueFrequencySet
• MIDROOT_SUM_OF_SQUARES : bpp::TreeTemplateTools
• MIDROOT_VARIANCE : bpp::TreeTemplateTools
• minimumBrLen_ : bpp::AbstractHomogeneousTreeLikelihood , bpp::AbstractNonHomogeneousTreeLikelihood , bpp::ParametrizablePhyloTree
• minusLogLik_ : bpp::AbstractPhyloLikelihood , bpp::DRHomogeneousTreeLikelihood , bpp::DRNonHomogeneousTreeLikelihood , bpp::RHomogeneousTreeLikelihood , bpp::RNonHomogeneousTreeLikelihood
• miu_ : bpp::UniformizationSubstitutionCount
• mixedModelPtr_ : bpp::AbstractBiblioMixedTransitionModel , bpp::InMixedSubstitutionModel
• mixedSubModelPtr_ : bpp::DFP07 , bpp::YNGP_M
• mixtName_ : bpp::FromMixtureSubstitutionModel , bpp::InMixedSubstitutionModel
• mixtureEvent : bpp::NodeEvent
• mModBrid_ : bpp::AbstractSinglePhyloSubstitutionMapping
• mModelScenario_ : bpp::SubstitutionProcessCollection
• mModelToSubPro_ : bpp::SubstitutionProcessCollection
• mModPath_ : bpp::ModelPath
• model : bpp::SimData
• model_ : bpp::AbstractHomogeneousTreeLikelihood , bpp::AbstractMutationProcess , bpp::AbstractTreeLikelihood::ConstNoPartitionBranchModelDescription , bpp::AbstractTreeLikelihood::ConstNoPartitionSiteModelDescription , bpp::BranchLikelihood , bpp::ConfiguredModel , bpp::DecompositionMethods , bpp::FromModelFrequencySet , bpp::gBGC , bpp::LaplaceSubstitutionCount , bpp::LikelihoodCalculationOnABranch , bpp::MarkovModulatedSubstitutionModel , bpp::MvaFrequencySet , bpp::OneJumpSubstitutionCount , bpp::ProcessComputationEdge , bpp::ProcessEdge , bpp::RateAcrossSitesSubstitutionProcess , bpp::SimpleSubstitutionProcess , bpp::UniformizationSubstitutionCount
• modelChanged_ : bpp::OneChangeRegisterTransitionModel
• modelColl_ : bpp::AbstractSinglePhyloSubstitutionMapping , bpp::CollectionNodes , bpp::SubstitutionProcessCollection
• modelNames_ : bpp::PairedSiteLikelihoods
• modelNode_ : bpp::LikelihoodCalculationSingleProcess::ProcessNodes
• modelParameters_ : bpp::NonHomogeneousSubstitutionProcess , bpp::SubstitutionModelSet
• models_ : bpp::ModelList
• modelScenario_ : bpp::AbstractAutonomousSubstitutionProcess
• modelsContainer_ : bpp::AbstractMixedTransitionModel
• modelSet_ : bpp::AbstractNonHomogeneousTreeLikelihood , bpp::NonHomogeneousSequenceSimulator , bpp::NonHomogeneousSubstitutionProcess , bpp::SubstitutionModelSet
• modelToNodes_ : bpp::NonHomogeneousSubstitutionProcess , bpp::SubstitutionModelSet , bpp::SubstitutionProcessCollectionMember
• mPhylo_ : bpp::PhyloLikelihoodContainer
• mProcess_ : bpp::SubstitutionProcessSequenceSimulator
• mProcPos_ : bpp::PartitionSequenceEvolution
• mSeqEvol_ : bpp::MixtureProcessPhyloLikelihood , bpp::MultiProcessSequencePhyloLikelihood , bpp::OneProcessSequencePhyloLikelihood , bpp::PartitionProcessPhyloLikelihood
• mStopNeigh_ : bpp::CodonFromIndependentFrequencySet , bpp::CodonFromUniqueFrequencySet
• mSubProcess_ : bpp::SubstitutionProcessCollection
• mTargetDimension_ : bpp::LogSumExp< R, T0, T1 > , bpp::SumOfLogarithms< F >
• mTreeToSubPro_ : bpp::SubstitutionProcessCollection
• mu_ : bpp::RE08 , bpp::TwoParameterBinarySubstitutionModel
• mVConstDist_ : bpp::SubstitutionProcessCollection
• mvPosNames_ : bpp::SubstitutionProcessSequenceSimulator
• mvTreeLikelihoods_ : bpp::RNonHomogeneousMixedTreeLikelihood