bpp::ProcessComputationEdge Class Reference

#include <Bpp/Phyl/Likelihood/ProcessComputationTree.h>

Inheritance diagram for bpp::ProcessComputationEdge:

Collaboration diagram for bpp::ProcessComputationEdge:

Public Member Functions
	ProcessComputationEdge (std::shared_ptr< const BranchModelInterface > model, uint nmodel, uint speciesIndex, bool useProb=false, const std::vector< uint > &vNb=Vuint(0))
	ProcessComputationEdge (const ProcessComputationEdge &edge)
std::shared_ptr< const BranchModelInterface >	getModel () const
uint	getModelNumber () const
uint	getSpeciesIndex () const
const std::vector< uint > &	subModelNumbers () const
bool	useProb () const

Private Attributes
std::shared_ptr< const BranchModelInterface >	model_
	Model carried by the branch. More...
uint	nmodel_
	Number of the model carried by the branch. More...
std::vector< uint >	vSubNb_
	numbers of the submodels used, if any. More...
bool	useProb_
	use the probability associated to the edge in case of mixture. If true, the probability is used and not the transition probabilities. More...
const uint	speciesIndex_
	the index of the species in the phyloTree matching this node. More...

Detailed Description

Definition at line 75 of file ProcessComputationTree.h.

Constructor & Destructor Documentation

ProcessComputationEdge() [1/2]

bpp::ProcessComputationEdge::ProcessComputationEdge ( std::shared_ptr< const BranchModelInterface >  model, uint  nmodel, uint  speciesIndex, bool  useProb = false, const std::vector< uint > &  vNb = Vuint(0)  )

inline

Definition at line 109 of file ProcessComputationTree.h.

ProcessComputationEdge() [2/2]

bpp::ProcessComputationEdge::ProcessComputationEdge ( const ProcessComputationEdge &  edge )

inline

Definition at line 122 of file ProcessComputationTree.h.

Member Function Documentation

getModel()

std::shared_ptr<const BranchModelInterface> bpp::ProcessComputationEdge::getModel ( ) const

inline

Definition at line 130 of file ProcessComputationTree.h.

References model_.

getModelNumber()

uint bpp::ProcessComputationEdge::getModelNumber ( ) const

inline

Definition at line 135 of file ProcessComputationTree.h.

References nmodel_.

getSpeciesIndex()

uint bpp::ProcessComputationEdge::getSpeciesIndex ( ) const

inline

Definition at line 140 of file ProcessComputationTree.h.

References speciesIndex_.

subModelNumbers()

const std::vector<uint>& bpp::ProcessComputationEdge::subModelNumbers ( ) const

inline

Definition at line 145 of file ProcessComputationTree.h.

References vSubNb_.

useProb()

bool bpp::ProcessComputationEdge::useProb ( ) const

inline

Definition at line 150 of file ProcessComputationTree.h.

References useProb_.

Member Data Documentation

model_

std::shared_ptr<const BranchModelInterface> bpp::ProcessComputationEdge::model_

private

Model carried by the branch.

Definition at line 81 of file ProcessComputationTree.h.

Referenced by getModel().

nmodel_

uint bpp::ProcessComputationEdge::nmodel_

private

Number of the model carried by the branch.

Definition at line 86 of file ProcessComputationTree.h.

Referenced by getModelNumber().

speciesIndex_

const uint bpp::ProcessComputationEdge::speciesIndex_

private

the index of the species in the phyloTree matching this node.

Definition at line 106 of file ProcessComputationTree.h.

Referenced by getSpeciesIndex().

useProb_

bool bpp::ProcessComputationEdge::useProb_

private

use the probability associated to the edge in case of mixture. If true, the probability is used and not the transition probabilities.

Definition at line 101 of file ProcessComputationTree.h.

Referenced by useProb().

vSubNb_

std::vector<uint> bpp::ProcessComputationEdge::vSubNb_

private

numbers of the submodels used, if any.

In practice, only vectors of size <=1 are implemented (ie individual submodels), to be fixed later.

Definition at line 94 of file ProcessComputationTree.h.

Referenced by subModelNumbers().

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The documentation for this class was generated from the following file:

• Bpp/Phyl/Likelihood/ProcessComputationTree.h