An implementation of the Uniform Manifold Approximation and Projection dimensionality reduction by McInnes et al. (2018) <doi:10.48550/arXiv.1802.03426>. It also provides means to transform new data and to carry out supervised dimensionality reduction. An implementation of the related LargeVis method of Tang et al. (2016) <doi:10.48550/arXiv.1602.00370> is also provided. This is a complete re-implementation in R (and C++, via the 'Rcpp' package): no Python installation is required. See the uwot website (<https://github.com/jlmelville/uwot>) for more documentation and examples.
| Version: | 0.2.4 |
| Depends: | Matrix |
| Imports: | FNN, irlba, methods, Rcpp, RcppAnnoy (≥ 0.0.17), RSpectra |
| LinkingTo: | dqrng, Rcpp, RcppAnnoy, RcppProgress |
| Suggests: | bigstatsr, covr, knitr, RcppHNSW, rmarkdown, rnndescent, testthat |
| Published: | 2025-11-10 |
| DOI: | 10.32614/CRAN.package.uwot |
| Author: | James Melville [aut, cre, cph], Aaron Lun [ctb], Mohamed Nadhir Djekidel [ctb], Yuhan Hao [ctb], Dirk Eddelbuettel [ctb], Wouter van der Bijl [ctb], Hugo Gruson [ctb] |
| Maintainer: | James Melville <jlmelville at gmail.com> |
| BugReports: | https://github.com/jlmelville/uwot/issues |
| License: | GPL (≥ 3) |
| URL: | https://github.com/jlmelville/uwot, https://jlmelville.github.io/uwot/ |
| NeedsCompilation: | yes |
| Materials: | NEWS |
| CRAN checks: | uwot results |
| Reference manual: | uwot.html , uwot.pdf |
| Vignettes: |
uwot (source, R code) |
| Package source: | uwot_0.2.4.tar.gz |
| Windows binaries: | r-devel: uwot_0.2.4.zip, r-release: uwot_0.2.4.zip, r-oldrel: uwot_0.2.4.zip |
| macOS binaries: | r-release (arm64): uwot_0.2.4.tgz, r-oldrel (arm64): uwot_0.2.4.tgz, r-release (x86_64): uwot_0.2.4.tgz, r-oldrel (x86_64): uwot_0.2.4.tgz |
| Old sources: | uwot archive |
| Reverse imports: | Banksy, bbknnR, BioM2, celda, CiteFuse, ClustAssess, Coralysis, dandelionR, embed, fastTopics, HDStIM, iCellR, infinityFlow, MAPFX, MethScope, MOFA2, mumosa, musicatk, mxnorm, pandemonium, pipeComp, POMA, rliger, scater, sccore, scDHA, scider, scROSHI, scStability, Seurat, spatialGE, symphony, WormTensor |
| Reverse suggests: | blase, bundle, CATALYST, celltrackR, conos, curatedMetagenomicData, densvis, DepecheR, doc2vec, dyndimred, Evacluster, FLAMES, ggspavis, graphlayouts, healthyR.ai, inferCSN, iSEEu, langevitour, lemur, looking4clusters, miloR, MiscMetabar, myTAI, netSmooth, NGCHM, pagoda2, ProjectionBasedClustering, qeML, rbiom, SCArray, SCIBER, scLANE, scp, SingleCellMultiModal, sketchR, slingshot, solitude, spatialHeatmap, standR, textplot, tidybulk, tidySingleCellExperiment, topicmodels.etm, TreeDist |
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