#include <Bpp/Graph/AssociationDAGraphImplObserver.h>
#include <Bpp/Seq/Container/AlignmentData.h>
#include "Bpp/Phyl/Likelihood/DataFlow/DataFlow.h"
#include "Bpp/Phyl/Likelihood/DataFlow/DataFlowCWiseComputing.h"
#include "Bpp/Phyl/SitePatterns.h"
#include "Bpp/Phyl/Likelihood/DataFlow/CollectionNodes.h"
#include "Bpp/Phyl/Likelihood/DataFlow/DiscreteDistribution.h"
#include "Bpp/Phyl/Likelihood/DataFlow/FrequencySet.h"
#include "Bpp/Phyl/Likelihood/DataFlow/LikelihoodCalculation.h"
#include "Bpp/Phyl/Likelihood/DataFlow/Model.h"
#include "Bpp/Phyl/Likelihood/SubstitutionProcess.h"

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Classes
class	bpp::LikelihoodCalculationSingleProcess

class	bpp::LikelihoodCalculationSingleProcess::RateCategoryTrees

class	bpp::LikelihoodCalculationSingleProcess::ProcessNodes
	DF Nodes used in the process. ProcessTree is used without any rate multiplier. More...

Namespaces
	bpp
	Defines the basic types of data flow nodes.

Typedefs
using	bpp::LikelihoodFromRootConditional = MatrixProduct< RowLik, RowLik, MatrixLik >
	likelihood = f(equilibriumFrequencies, rootConditionalLikelihood). More...

using	bpp::ConditionalLikelihoodDAG = AssociationDAGlobalGraphObserver< ConditionalLikelihood, uint >

using	bpp::ConditionalLikelihoodTree = AssociationTreeGlobalGraphObserver< ConditionalLikelihood, uint >

using	bpp::SiteLikelihoodsDAG = AssociationDAGlobalGraphObserver< SiteLikelihoods, uint >

using	bpp::SiteLikelihoodsTree = AssociationTreeGlobalGraphObserver< SiteLikelihoods, uint >

Classes

Namespaces

Typedefs