Here is a list of all class members with links to the classes they belong to:

- g -

• generateDiploids_ : bpp::VcfOutputMafIterator
• genotypes_ : bpp::VcfOutputMafIterator
• getAlignment() : bpp::MafBlock
• getAllFeatures() : bpp::BedGraphFeatureReader , bpp::FeatureReader , bpp::GffFeatureReader , bpp::GtfFeatureReader
• getAttribute() : bpp::BasicSequenceFeature , bpp::SequenceFeature
• getAttributeList() : bpp::BasicSequenceFeature , bpp::SequenceFeature
• getAvailableTags() : bpp::MafStatisticsResult
• getCategory() : bpp::SiteFrequencySpectrumMafStatistics::Categorizer
• getChromosome() : bpp::MafSequence
• getDataType() : bpp::Fastq
• getDescription() : bpp::MafBlock , bpp::MafSequence
• getEnd() : bpp::BasicSequenceFeature , bpp::SequenceFeature
• getFeature() : bpp::SequenceFeatureSet
• getFeaturesOfSequence() : bpp::BedGraphFeatureReader , bpp::FeatureReader , bpp::GffFeatureReader , bpp::GtfFeatureReader
• getFeaturesOfType() : bpp::BedGraphFeatureReader , bpp::FeatureReader , bpp::GffFeatureReader , bpp::GtfFeatureReader
• getFormatDescription() : bpp::Fastq
• getFormatName() : bpp::Fastq
• getFullName() : bpp::AlignmentScoreMafStatistics , bpp::BlockLengthMafStatistics , bpp::BlockSizeMafStatistics , bpp::CharacterCountsMafStatistics , bpp::FourSpeciesPatternCountsMafStatistics , bpp::MafStatistics , bpp::PairwiseDivergenceMafStatistics , bpp::PolymorphismMafStatistics , bpp::SequenceDiversityMafStatistics , bpp::SequenceLengthMafStatistics , bpp::SiteFrequencySpectrumMafStatistics , bpp::SiteMafStatistics
• getGenomicSize() : bpp::MafSequence
• getId() : bpp::BasicSequenceFeature , bpp::SequenceFeature
• getNextLine_() : bpp::BedGraphFeatureReader , bpp::GffFeatureReader , bpp::GtfFeatureReader
• getNumberOfCategories() : bpp::SiteFrequencySpectrumMafStatistics::Categorizer
• getNumberOfFeatures() : bpp::SequenceFeatureSet
• getNumberOfSequences() : bpp::MafBlock
• getNumberOfSites() : bpp::MafBlock
• getOrfs() : bpp::SequenceFeatureTools
• getPass() : bpp::MafBlock
• getPatterns_() : bpp::PolymorphismMafStatistics , bpp::SequenceDiversityMafStatistics
• getProperty() : bpp::MafBlock
• getRange() : bpp::BasicSequenceFeature , bpp::MafSequence , bpp::SequenceFeature
• getResult() : bpp::AbstractMafStatistics , bpp::AbstractMafStatisticsSimple , bpp::MafStatistics
• getResults() : bpp::SequenceStatisticsMafIterator
• getResultsColumnNames() : bpp::SequenceStatisticsMafIterator
• getScore() : bpp::BasicSequenceFeature , bpp::MafBlock , bpp::SequenceFeature
• getSequence() : bpp::MafBlock
• getSequenceForSpecies() : bpp::MafBlock
• getSequenceId() : bpp::BasicSequenceFeature , bpp::SequenceFeature
• getSequences() : bpp::SequenceFeatureSet
• getSequencesForSpecies() : bpp::MafBlock
• getShortName() : bpp::AlignmentScoreMafStatistics , bpp::BlockLengthMafStatistics , bpp::BlockSizeMafStatistics , bpp::CharacterCountsMafStatistics , bpp::FourSpeciesPatternCountsMafStatistics , bpp::MafStatistics , bpp::PairwiseDivergenceMafStatistics , bpp::PolymorphismMafStatistics , bpp::SequenceDiversityMafStatistics , bpp::SequenceLengthMafStatistics , bpp::SiteFrequencySpectrumMafStatistics , bpp::SiteMafStatistics
• getSiteContainer_() : bpp::AbstractSpeciesSelectionMafStatistics
• getSiteContainers_() : bpp::AbstractSpeciesMultipleSelectionMafStatistics
• getSource() : bpp::BasicSequenceFeature , bpp::SequenceFeature
• getSpecies() : bpp::MafSequence
• getSpeciesList() : bpp::MafBlock
• getSrcSize() : bpp::MafSequence
• getStart() : bpp::BasicSequenceFeature , bpp::SequenceFeature
• getStrand() : bpp::MafSequence , bpp::SeqRange
• getSubsetForRange() : bpp::SequenceFeatureSet
• getSubsetForSequence() : bpp::SequenceFeatureSet
• getSubsetForSequences() : bpp::SequenceFeatureSet
• getSubsetForType() : bpp::SequenceFeatureSet
• getSubsetForTypes() : bpp::SequenceFeatureSet
• getSupportedTags() : bpp::AbstractMafStatisticsSimple , bpp::CharacterCountsMafStatistics , bpp::FourSpeciesPatternCountsMafStatistics , bpp::MafStatistics , bpp::PolymorphismMafStatistics , bpp::SequenceDiversityMafStatistics , bpp::SiteFrequencySpectrumMafStatistics , bpp::SiteMafStatistics
• getType() : bpp::BasicSequenceFeature , bpp::SequenceFeature
• getTypes() : bpp::SequenceFeatureSet
• getValue() : bpp::MafStatisticsResult , bpp::SimpleMafStatisticsResult
• GFF_ALIAS : bpp::GffFeatureReader
• GFF_DBXREF : bpp::GffFeatureReader
• GFF_DERIVES_FROM : bpp::GffFeatureReader
• GFF_GAP : bpp::GffFeatureReader
• GFF_IS_CIRCULAR : bpp::GffFeatureReader
• GFF_NAME : bpp::GffFeatureReader
• GFF_NOTE : bpp::GffFeatureReader
• GFF_ONTOLOGY_TERM : bpp::GffFeatureReader
• GFF_PARENT : bpp::GffFeatureReader
• GFF_PHASE : bpp::GffFeatureReader
• GFF_STRAND : bpp::GffFeatureReader
• GFF_TARGET : bpp::GffFeatureReader
• GffFeatureReader() : bpp::GffFeatureReader
• GTF_GENE_ID : bpp::GtfFeatureReader
• GTF_PHASE : bpp::GtfFeatureReader
• GTF_TRANSCRIPT_ID : bpp::GtfFeatureReader
• GtfFeatureReader() : bpp::GtfFeatureReader