Class List
Here are the classes, structs, unions and interfaces with brief descriptions:
[detail level 123]
| ►Nbpp | |
| CAbstractColorSet | Partial implementation of the ColorSet interface |
| ►CAbstractDiscreteDistribution | Partial implementation of the DiscreteDistribution interface |
| COrder | Comparator class for AbstractDiscreteDistribution |
| CAbstractFontManager | |
| CAbstractGraphicDevice | Partial implementation of the GraphicDevice interface |
| CAbstractHmmLikelihood | Partial impmementation of Hmm Likelihoods |
| CAbstractHmmTransitionMatrix | Partial implementation of HmmTransitionMatrix |
| CAbstractNumericalDerivative | Numerical derivative function wrapper, partial implementation |
| CAbstractOptimizationStopCondition | Partial implementation of the OptimizationStopCondition interface |
| CAbstractOptimizer | Partial implementation of the Optimizer interface |
| CAbstractOutputStream | Helper implementation of the OutputStream interface |
| CAbstractParameterAliasable | A partial implementation of the Parametrizable interface |
| CAbstractParametrizable | A partial implementation of the Parametrizable interface |
| CAdaptiveKernelDensityEstimation | Density estimation using the adaptive kernel method |
| CAliasParameterListener | Inner listener class used by AbstractParameterAliasable |
| CApplicationTools | This class provides some common tools for developping applications |
| CAssociationDAGraphImplObserver | |
| CAssociationDAGraphObserver | Defines a DA Graph Associator. It is a template which follows (subscribed to) a Graph |
| ►CAssociationGraphImplObserver | |
| CEdgeIteratorClass | |
| CNodeIteratorClass | |
| ►CAssociationGraphObserver | Defines a Graph Associator. It is a template which follows (subscribed to) a Graph |
| CEdgeIterator | |
| CNodeIterator | |
| CAssociationTreeGraphImplObserver | |
| CAssociationTreeGraphObserver | Defines a Tree Graph Associator. It is a template which follows (subscribed to) a Graph |
| CAttributesTools | Some functions to deal with attributes, i.e. parameters passed to a program/method |
| CAutoCorrelationTransitionMatrix | Describe the auto-correlation probabilities inside hidden states of a Hidden Markov Model |
| CAutoParameter | The AutoParameter class |
| CBackupListener | Save intermediate optimization results to file |
| CBadIntegerException | Number exception: integers |
| CBadNumberException | Number exception: doubles |
| CBadSizeException | Wrong size exception class |
| CBetaDiscreteDistribution | Discretized Beta distribution with parameters alpha and beta, on a given interval. On default, the interval is ![$ [0;1] $](form_79.png) , but it can be restricted |
| CBfgsMultiDimensions | Broyden–Fletcher–Goldfarb–Shanno (BFGS) optimization method |
| CBinaryOperator | Binary arithmetic operator for numerical computation |
| CBppApplication | |
| CBppBoolean | The BppBoolean object class. This class extends the bool type to support the Clonable interface |
| CBppDouble | An object wrapper for double values |
| CBppInteger | An object wrapper for integer values |
| CBppNotANumber | |
| CBppNumberI | The Number interface |
| CBppODiscreteDistributionFormat | Discrete Distribution I/O in BppO format |
| CBppOParametrizableFormat | Parametrizable output in BppO format |
| CBppString | The BppString object class. This class extends the stl::string class to support the Clonable interface |
| CBppUnsignedInteger | An object wrapper for unsigned integer values |
| CBppVector | The BppVector object class. This class extends the std::vector class to support the Clonable interface |
| CBracket | |
| CBracketPoint | |
| ►CBrentOneDimension | Brent's optimization for one parameter |
| CBODStopCondition | |
| CClonable | The Clonable interface (allow an object to be cloned) |
| CColMatrix | Matrix storage by column |
| CColorManager | Associate special colors to a code |
| CColorSet | Specify a set of color definitions |
| CColorTools | Provide tools to deal with color objects |
| CComputationTree | Defines a Computation Tree based on Operators |
| CConjugateGradientMultiDimensions | Conjugate gradient optimization method |
| CConstantDistribution | Constant discrete distribution |
| CConstantOperator | Constant (ie leaf) operator |
| CConstraintException | Exception thrown when a value do not match a given constraint |
| CConstraintInterface | The constraint interface |
| CContingencyTableGenerator | Generate a random contingency matrix with given marginal counts |
| CContingencyTableTest | Implements tests on contingency tables |
| CCoordsTools | Some functions to deal with Point2D |
| CCorrespondenceAnalysis | This class allows to perform a correspondence analysis |
| CDAGraph | |
| CDAGraphImpl | |
| CDataTable | This class corresponds to a 'dataset', i.e. a table with data by rows and variable by columns |
| CDefaultColorSet | Default color definitions |
| CDimensionException | Exception thrown when a dimension problem occured |
| CDirectionFunction | |
| CDirichletDiscreteDistribution | Discretized Dirichlet distribution. If the distribution is in n dimensions, the domain is the n-1 simplex |
| CDiscreteDistributionInterface | Interface for discrete distribution objects |
| ►CDownhillSimplexMethod | This implements the Downhill Simplex method in multidimensions |
| CDSMStopCondition | |
| CSimplex | |
| CDualityDiagram | The core class of a multivariate analysis |
| CDuplicatedTableColumnNameException | Excpetion thrown when attempting to duplicate a column name |
| CDuplicatedTableRowNameException | Exception thrown when attempting to duplicate a row name |
| CDvipsColorSet | The dvips color definitions |
| CEdgesIteratorClass | |
| CEdgesIteratorClass< Graph::ALLGRAPHITER, is_const > | |
| CEdgesIteratorClass< Graph::INCOMINGNEIGHBORITER, is_const > | |
| CEdgesIteratorClass< Graph::OUTGOINGNEIGHBORITER, is_const > | |
| CEigenValue | Computes eigenvalues and eigenvectors of a real (non-complex) matrix |
| CElementNotFoundException | Exception thrown when a given element was not found in the vector |
| CEmptyVectorException | Exception thrown when an empty vector was found |
| CException | Exception base class. Overload exception constructor (to control the exceptions mechanism). Destructor is already virtual (from std::exception) |
| CExponentialDiscreteDistribution | Discretized Exponential distribution |
| CFileTools | Some utilitary functions to deal with files |
| CFirstOrderDerivable | This is the abstract class for first order derivable functions |
| CFirstOrderDerivableWrapper | General class that wraps a function into another one. This class is meant to be derivated and just provides a general framework |
| CFivePointsNumericalDerivative | Five points numerical derivative function wrapper |
| CFont | Data structure for fonts |
| CFontManager | Associate special fonts to a code |
| CFullHmmTransitionMatrix | Describe the transition probabilities between hidden states of a Hidden Markov Model |
| CFunctionInterface | This is the function abstract class |
| CFunctionOperator | Implements a double operator (ie leaf in the computation tree) where value comes from a function |
| CFunctionStopCondition | Stop condition on function value |
| CFunctionTools | This class contains static methods to deal with Function objects |
| CFunctionWrapper | General class that wraps a function into another one. This class is meant to be derivated and just provides a general framework |
| CGammaDiscreteDistribution | Discretized Gamma distribution with an offset |
| CGaussianDiscreteDistribution | Discretized Gaussian distribution |
| CGlobalGraph | |
| ►CGoldenSectionSearch | Golden Section Search optimization algorithm for one parameter |
| CGSSStopCondition | |
| ►CGraph | |
| CALLGRAPHITER | Define categories of iterators |
| CEdgeIterator | |
| CINCOMINGNEIGHBORITER | |
| CNodeIterator | |
| COUTGOINGNEIGHBORITER | |
| CGraphicDevice | Interface for all plotting devices |
| CGraphObserver | Defines a Graph Observer. It is a template which follows (subscribed to) a Graph. The graph and the graph observer communicate to keep them up-to-date each other. The observer is also an actor, since it can change the structure of the observed Graph |
| CHmmBadStateException | Exception thrown when an unvalid state is requested |
| CHmmEmissionProbabilities | Interface for computing emission probabilities in a Hidden Markov Model |
| CHmmLikelihood | Basal interface for Hidden Markov Models likelihood computation |
| CHmmStateAlphabet | Hidden states alphabet |
| CHmmTransitionMatrix | Describe the transition probabilities between hidden states of a Hidden Markov Model |
| CHmmUnvalidAlphabetException | Exception thrown when an unvalid alphabet is specified |
| CIDiscreteDistribution | General interface for distance matrix readers |
| CIndexOutOfBoundsException | Index out of bounds exception class |
| CInfinityDerivableFirstOrderWrapper | Wrapper class for optimization under constraints |
| CInfinityDerivableSecondOrderWrapper | Wrapper class for optimization under constraints |
| CInfinityFunctionWrapper | Wrapper class for optimization under constraints |
| CIntervalConstraint | An interval, either bounded or not, which can also have infinite bounds |
| CIntervalTransformedParameter | Parameter transformation from ] a, b [ to ]-inf, + inf [ |
| CInvariantMixedDiscreteDistribution | Discrete mixed distribution, with a one-category fixed value (called "invariant") and a user-specified multi-categories distribution |
| CIoDiscreteDistribution | General interface for model I/O |
| CIoDiscreteDistributionFactory | Utilitary class for creating discrete distribution readers and writers |
| CIOException | The base class exception for IO error |
| CIOFormat | The IOFormat interface |
| CIOParametrizable | General interface for parametrizable Output |
| CKeyvalException | Exception thrown by the Keyval parser |
| CKeyvalTools | Tools to deal with the keyval syntax |
| CLinearMatrix | Matrix storage in one vector |
| CLogsumHmmLikelihood | A simple implementation of hidden Markov models recursion |
| CLowMemoryRescaledHmmLikelihood | A modified implementation of the RescaledHmmLikelihood implementation, with lower memory usage |
| CLUDecomposition | LU Decomposition |
| CMapTools | A fiew tools working on map objects |
| CMathOperator | Implements a unary operator that applies a math (described in cmath) operator |
| CMatrix | The matrix template interface |
| CMatrixTools | Functions dealing with matrices |
| CMetaOptimizer | Meta-optimizer |
| CMetaOptimizerInfos | Provide a list of optimizer and corresponding options to be used with the MetaOptimizer class |
| CMixtureOfDiscreteDistributions | A Discrete distribution object defined by a vector of Discrete Distributions and a set of probabilities for these Discrete Distributions |
| CMolscriptColorSet | Molscript color definitions |
| CMultipleDiscreteDistribution | Interface for multiple discrete distribution objects |
| CMultiRange | This class implements a data structure describing a set of non-overlapping intervals |
| CNegativeOperator | Negative value for an operator |
| CNeighborIteratorClass | Abstract class for neighbor iterators |
| CNestedStringTokenizer | An improved tokenizer for strings |
| ►CNewtonBacktrackOneDimension | Newton's backtrack nearly optimization for one parameter |
| CNBODStopCondition | |
| CNewtonOneDimension | Newton's optimization for one parameter |
| CNodesIteratorClass | |
| CNodesIteratorClass< Graph::ALLGRAPHITER, is_const > | |
| CNodesIteratorClass< Graph::INCOMINGNEIGHBORITER, is_const > | |
| CNodesIteratorClass< Graph::OUTGOINGNEIGHBORITER, is_const > | |
| CNoTableColumnNamesException | Exception thrown when trying to retrieve a column by its name and no column names have been specified |
| CNoTableRowNamesException | Exception thrown when trying to retrieve a row by its name and no row names have been specified |
| CNotImplementedException | This exception is sent when a given method is not implemented |
| CNullOutputStream | Null output stream (swich off output) |
| CNullPointerException | The base class exception for NULL pointer error. This exception may be thrown when an unexpected NULL pointer is found |
| CNumber | The Number object template class |
| CNumberFormatException | Number format exception |
| CNumCalcApplicationTools | |
| CNumConstants | This static class contains several useful constant values |
| CNumericalDerivativeInterface | Numerical derivative function wrapper |
| CNumTools | Some utilitary function for numerical calculus |
| CODiscreteDistribution | General interface writers |
| COneDimensionOptimizationTools | Tools of one parameter-functions optimizations |
| COParametrizable | General interface writers |
| COperator | Interface of operator for numerical computation |
| COptimizationEvent | An event object which indicates that an optimization event occured |
| COptimizationListener | The listener interface for receiving optimization events |
| COptimizationStopCondition | Interface for otimization stop condition objet |
| COptimizerInterface | This is the basal interface for all optimization methods |
| COrderedSimplex | Simplex where all values are in decreasing order |
| COutOfRangeException | Out of range exception class |
| COutputStream | OutputStream interface |
| CParameter | This class is designed to facilitate the manipulation of parameters |
| CParameterAliasable | Extend the Parametrizable interface with support for parameter aliases |
| CParameterAliasableAdapter | A low-level implementation of the ParameterAliasable interface with void functions |
| CParameterEvent | |
| CParameterException | The parameter exception base class |
| CParameterGrid | This class is a data structure to specify a set of parameter values (most likely for evaluation by a Function) |
| CParameterList | The parameter list object |
| CParameterListener | The parameter listener interface |
| CParameterNotFoundException | Exception thrown when a parameter is not found, for instance in a ParameterList |
| CParametersStopCondition | Stop condition on parameters |
| CParametrizable | This is the interface for all objects that imply parameters |
| CParametrizableAdapter | A low-level implementation of the Parametrizable interface with void functions |
| CParametrizableCollection | Plain collection of parametrizable objects |
| CPgfGraphicDevice | LaTeX Portable Graphic Format (Pgf) plotting format |
| CPlaceboTransformedParameter | 'Placebo' parameter transformation from ] b, +inf [ or ] -inf, b [ to ]-inf, + inf [ |
| CPoint2D | The Point2D class |
| ►CPowellMultiDimensions | Powell's multi-dimensions optimization algorithm for one parameter |
| CPMDStopCondition | |
| CPrincipalComponentAnalysis | This class allows to perform a principal component analysis |
| CRandomTools | Utilitary function dealing with random numbers |
| CRange | The Range class, defining an interval |
| CRangeCollection | Interface discribing a collection of Range objects |
| CrangeComp_ | A special class used inside RangeCollection |
| CRangeSet | This class implements a data structure describing a set of intervals |
| CRColorSet | R color definitions |
| CReparametrizationDerivableFirstOrderWrapper | Function wrapper that remove simple constraints on parameters. Also transform first order derivatives |
| CReparametrizationDerivableSecondOrderWrapper | Function wrapper that remove simple constraints on parameters. Also transform first and second order derivatives |
| CReparametrizationFunctionWrapper | Function wrapper that remove simple constraints on parameters |
| CRescaledHmmLikelihood | A simple implementation of hidden Markov models recursion |
| CRGBColor | Describe a color according to its red, green and blue componants |
| CRowMatrix | Matrix storage by row |
| CRTransformedParameter | Parameter transformation from ] b, +inf [ or ] -inf, b [ to ]-inf, + inf [ |
| CSecondOrderDerivable | This is the abstract class for second order derivable functions |
| CSecondOrderDerivableWrapper | General class that wraps a function into another one. This class is meant to be derivated and just provides a general framework |
| CSimpleDiscreteDistribution | A Discrete distribution object, where some specific probabilities are assigned to a finite set of values |
| CSimpleMultiDimensions | This Optimizer is a very simple multi-dimensions optimizer, calling a one dimensional optimizer on each parameter |
| CSimpleNewtonMultiDimensions | This Optimizer is a simple multi-dimensions optimizer, calling the Newton one dimensional optimizer on each parameter |
| CSimplex | A Simplex object, used to define sets of probabilities that sum 1 |
| CStateChangedEvent | |
| CStateListener | |
| CStatTest | Interface for statistical test results |
| ►CStatTools | Statistics tools and utilitary functions |
| CPValue_ | |
| CStdErr | Standard error stream |
| CStdOut | Standard output stream |
| CStdStr | String output stream |
| CStlOutputStream | STL output stream |
| CStlOutputStreamWrapper | STL wrapper for output stream |
| CStringTokenizer | A tokenizer for strings |
| CSvgGraphicDevice | SVG plotting format |
| CTable | This class corresponds to a 'dataset', i.e. a table with data by rows and variable by columns |
| CTableColumnNameNotFoundException | Exception thrown when a given column name is not found is a DataTable object |
| CTableColumnNamesException | General exception class dealing with column names |
| CTableNameNotFoundException | Exception thrown when a given name is not found is a DataTable object |
| CTableRowNameNotFoundException | Exception thrown when a given row name is not found is a DataTable object |
| CTableRowNamesException | General exception class dealing with row names |
| CTestFunction | A simple function with two parameters, mostly for testing and debugging :) |
| CThreePointsNumericalDerivative | Three points numerical derivative function wrapper |
| CTransformedParameter | The TransformedParameter abstract class |
| CTreeGraph | |
| CTreeGraphImpl | |
| CTruncatedExponentialDiscreteDistribution | Discretized Truncated (on the right) Exponential distribution, where the probabilities are given the exponential, conditioned by the upper limit |
| CTwoPointsNumericalDerivative | Two points numerical derivative function wrapper |
| CUniformDiscreteDistribution | Discretized Uniform distribution. All categories are equidistributed all along a given interval |
| CUnvalidFlagException | |
| CVectorException | General Exception dealing with vectors |
| ►CVectorTools | |
| Corder_Cmp_ | |
| CXFigColorManager | Color manager for the XFig format |
| CXFigGraphicDevice | XFig plotting format |
| CXFigLaTeXFontManager | LaTeX font manager for the XFig format |
| CXFigPostscriptFontManager | Postscript font manager for the XFig format |
| CZeroDivisionException | The base class exception for zero division error |
