Here is a list of all class members with links to the classes they belong to:

- g -

• g_ : bpp::ConjugateGradientMultiDimensions
• ga1_ : bpp::GammaDiscreteDistribution
• gamma_ : bpp::AdaptiveKernelDensityEstimation
• GammaDiscreteDistribution() : bpp::GammaDiscreteDistribution
• GaussianDiscreteDistribution() : bpp::GaussianDiscreteDistribution
• getAcceptedLimit() : bpp::ConstraintInterface , bpp::IntervalConstraint
• getAFilePath() : bpp::ApplicationTools
• getAlias() : bpp::AbstractParameterAliasable , bpp::AliasParameterListener , bpp::ParameterAliasable , bpp::ParameterAliasableAdapter
• getAliasedParameters() : bpp::AbstractParameterAliasable
• getAliases() : bpp::AbstractParameterAliasable , bpp::ParameterAliasable , bpp::ParameterAliasableAdapter
• getAllEdges() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E > , bpp::GlobalGraph , bpp::Graph
• getAllEdgesIndexes() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E >
• getAllInnerNodes() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E > , bpp::GlobalGraph , bpp::Graph
• getAllInnerNodesIndexes() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E >
• getAllLeaves() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E > , bpp::GlobalGraph , bpp::Graph
• getAllLeavesIndexes() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E >
• getAllNodes() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E > , bpp::GlobalGraph , bpp::Graph
• getAllNodesIndexes() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E >
• getAnyEdge() : bpp::GlobalGraph , bpp::Graph
• getAttributesMap() : bpp::AttributesTools
• getAttributesMapFromFile() : bpp::AttributesTools
• getBadIndex() : bpp::IndexOutOfBoundsException
• getBadInteger() : bpp::BadIntegerException
• getBadNumber() : bpp::BadNumberException , bpp::NumberFormatException
• getBadSize() : bpp::BadSizeException
• getBadValue() : bpp::ConstraintException , bpp::OutOfRangeException
• getBelowEdges() : bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl > , bpp::AssociationDAGraphObserver< N, E > , bpp::DAGraph , bpp::DAGraphImpl< GraphImpl >
• getBelowNodes() : bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl > , bpp::AssociationDAGraphObserver< N, E > , bpp::DAGraph , bpp::DAGraphImpl< GraphImpl >
• getBooleanParameter() : bpp::ApplicationTools
• getBottom() : bpp::GlobalGraph , bpp::Graph
• getBound() : bpp::AbstractDiscreteDistribution , bpp::DiscreteDistributionInterface
• getBounds() : bpp::AbstractDiscreteDistribution , bpp::DiscreteDistributionInterface , bpp::IndexOutOfBoundsException , bpp::MultiRange< T >
• getBracketing() : bpp::BrentOneDimension
• getBranches() : bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl > , bpp::AssociationTreeGraphObserver< N, E > , bpp::TreeGraph , bpp::TreeGraphImpl< GraphImpl >
• getBreakPoints() : bpp::HmmLikelihood , bpp::LogsumHmmLikelihood , bpp::LowMemoryRescaledHmmLikelihood , bpp::RescaledHmmLikelihood
• getBurnin() : bpp::AbstractOptimizationStopCondition
• getCategories() : bpp::AbstractDiscreteDistribution , bpp::DirichletDiscreteDistribution , bpp::DiscreteDistributionInterface
• getCategory() : bpp::AbstractDiscreteDistribution , bpp::DiscreteDistributionInterface
• getCategoryIndex() : bpp::AbstractDiscreteDistribution , bpp::DiscreteDistributionInterface
• getCode() : bpp::AbstractFontManager< CodeType > , bpp::ColorManager< CodeType > , bpp::FontManager< CodeType > , bpp::XFigColorManager
• getCodes() : bpp::AbstractFontManager< CodeType > , bpp::ColorManager< CodeType > , bpp::FontManager< CodeType > , bpp::XFigColorManager
• getCol() : bpp::ColMatrix< Scalar >
• getColCoordinates() : bpp::DualityDiagram
• getColor() : bpp::AbstractColorSet , bpp::ColorManager< CodeType > , bpp::ColorSet , bpp::XFigColorManager
• getColorNames() : bpp::AbstractColorSet , bpp::ColorSet
• getColors() : bpp::ColorManager< CodeType > , bpp::XFigColorManager
• getColumn() : bpp::DataTable , bpp::Table< T >
• getColumnMeans() : bpp::PrincipalComponentAnalysis
• getColumnName() : bpp::DataTable , bpp::Table< T >
• getColumnNames() : bpp::DataTable , bpp::Table< T >
• getColumnSd() : bpp::PrincipalComponentAnalysis
• getColumnWeights() : bpp::DualityDiagram
• getCommonParametersWith() : bpp::ParameterList
• getConstraint() : bpp::Parameter
• getConstraintPolicy() : bpp::AbstractOptimizer , bpp::DirectionFunction , bpp::OptimizerInterface
• getCorrectDimension() : bpp::DimensionException
• getCorrectSize() : bpp::BadSizeException
• getCurrentBackgroundColor() : bpp::AbstractGraphicDevice , bpp::GraphicDevice
• getCurrentFont() : bpp::AbstractGraphicDevice , bpp::GraphicDevice
• getCurrentForegroundColor() : bpp::AbstractGraphicDevice , bpp::GraphicDevice
• getCurrentLayer() : bpp::AbstractGraphicDevice , bpp::GraphicDevice
• getCurrentLineType() : bpp::AbstractGraphicDevice , bpp::GraphicDevice
• getCurrentPointSize() : bpp::AbstractGraphicDevice , bpp::GraphicDevice
• getCurrentTolerance() : bpp::BrentOneDimension::BODStopCondition , bpp::DownhillSimplexMethod::DSMStopCondition , bpp::FunctionStopCondition , bpp::GoldenSectionSearch::GSSStopCondition , bpp::NewtonBacktrackOneDimension::NBODStopCondition , bpp::OptimizationStopCondition , bpp::ParametersStopCondition , bpp::PowellMultiDimensions::PMDStopCondition
• getD() : bpp::EigenValue< Real >
• getD2EmissionProbabilities() : bpp::HmmEmissionProbabilities
• getD2LogLikelihood() : bpp::AbstractHmmLikelihood , bpp::HmmLikelihood
• getD2LogLikelihoodForASite() : bpp::HmmLikelihood , bpp::LogsumHmmLikelihood , bpp::LowMemoryRescaledHmmLikelihood , bpp::RescaledHmmLikelihood
• getData() : bpp::Table< T >
• getDataType() : bpp::IoDiscreteDistribution , bpp::IOFormat , bpp::IOParametrizable
• getDefaultStopCondition() : bpp::AbstractOptimizer , bpp::OptimizerInterface
• getDefaultValue() : bpp::NumCalcApplicationTools
• getDegree() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::GlobalGraph , bpp::Graph
• getDegreesOfFreedom() : bpp::ContingencyTableTest
• getDEmissionProbabilities() : bpp::HmmEmissionProbabilities
• getDescription() : bpp::ConstraintInterface , bpp::IntervalConstraint
• getDimension() : bpp::DimensionException , bpp::DownhillSimplexMethod::Simplex
• getDimensionName() : bpp::ParameterGrid
• getDimensionNames() : bpp::ParameterGrid
• getDistanceBetween() : bpp::CoordsTools
• getDLogLikelihood() : bpp::AbstractHmmLikelihood , bpp::HmmLikelihood
• getDLogLikelihoodForASite() : bpp::HmmLikelihood , bpp::LogsumHmmLikelihood , bpp::LowMemoryRescaledHmmLikelihood , bpp::RescaledHmmLikelihood
• getDoubleParameter() : bpp::ApplicationTools
• getEdge() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E > , bpp::GlobalGraph , bpp::Graph
• getEdgeFromGraphid() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E >
• getEdgeGraphid() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E >
• getEdgeIndex() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E >
• getEdgeIndexes() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E >
• getEdgeLinking() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E >
• getEdgePathBetweenTwoNodes() : bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl > , bpp::AssociationTreeGraphObserver< N, E > , bpp::TreeGraph , bpp::TreeGraphImpl< GraphImpl >
• getEdges() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E > , bpp::GlobalGraph , bpp::Graph
• getEdges_() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::GlobalGraph
• getEdgesFromGraphid() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E >
• getEdgeToFather() : bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl > , bpp::AssociationTreeGraphObserver< N, E > , bpp::TreeGraph , bpp::TreeGraphImpl< GraphImpl >
• getEigenValues() : bpp::DualityDiagram
• getElement() : bpp::ElementNotFoundException< T >
• getEquilibriumFrequencies() : bpp::AutoCorrelationTransitionMatrix , bpp::FullHmmTransitionMatrix , bpp::HmmTransitionMatrix
• getExtension() : bpp::FileTools
• getFamily() : bpp::Font
• getFatherOfEdge() : bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl > , bpp::AssociationDAGraphObserver< N, E > , bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl > , bpp::AssociationTreeGraphObserver< N, E >
• getFatherOfNode() : bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl > , bpp::AssociationTreeGraphObserver< N, E > , bpp::TreeGraph , bpp::TreeGraphImpl< GraphImpl >
• getFathers() : bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl > , bpp::AssociationDAGraphObserver< N, E > , bpp::DAGraph , bpp::DAGraphImpl< GraphImpl >
• getFileName() : bpp::FileTools
• getFileSize() : bpp::FileTools
• getFillCode() : bpp::XFigGraphicDevice
• getFirstKey() : bpp::ParametrizableCollection< N >
• getFirstOrderDerivableFunction() : bpp::BfgsMultiDimensions , bpp::ConjugateGradientMultiDimensions , bpp::NewtonBacktrackOneDimension , bpp::NewtonOneDimension
• getFirstOrderDerivative() : bpp::AbstractHmmLikelihood , bpp::AbstractNumericalDerivative , bpp::BinaryOperator , bpp::ComputationTree , bpp::ConstantOperator , bpp::FirstOrderDerivable , bpp::FirstOrderDerivableWrapper , bpp::FunctionOperator< F > , bpp::InfinityDerivableFirstOrderWrapper , bpp::IntervalTransformedParameter , bpp::MathOperator , bpp::NegativeOperator , bpp::Operator , bpp::PlaceboTransformedParameter , bpp::ReparametrizationDerivableFirstOrderWrapper , bpp::RTransformedParameter , bpp::TransformedParameter
• getFirstOrderDerivative_() : bpp::FunctionOperator< F >
• getFont() : bpp::AbstractFontManager< CodeType > , bpp::FontManager< CodeType >
• getFonts() : bpp::AbstractFontManager< CodeType > , bpp::FontManager< CodeType >
• getFontShape() : bpp::PgfGraphicDevice
• getFormatDescription() : bpp::BppODiscreteDistributionFormat , bpp::BppOParametrizableFormat , bpp::IOFormat
• getFormatName() : bpp::BppODiscreteDistributionFormat , bpp::BppOParametrizableFormat , bpp::IOFormat
• getFrequencies() : bpp::OrderedSimplex , bpp::Simplex
• getFrom() : bpp::AbstractParameterAliasable , bpp::AliasParameterListener
• getFromParameters() : bpp::AbstractParameterAliasable
• getFunction() : bpp::AbstractOptimizer , bpp::DirectionFunction , bpp::OptimizerInterface , bpp::ReparametrizationFunctionWrapper
• getFunction_() : bpp::AbstractOptimizer
• getFunctionParameters() : bpp::DirectionFunction
• getFunctionValue() : bpp::AbstractOptimizer , bpp::GoldenSectionSearch , bpp::OptimizerInterface
• getGradient() : bpp::BfgsMultiDimensions , bpp::ConjugateGradientMultiDimensions
• getGraph() : bpp::AssociationGraphImplObserver< N, E, GraphImpl >
• getHiddenStatesPosteriorProbabilities() : bpp::HmmLikelihood , bpp::LogsumHmmLikelihood , bpp::LowMemoryRescaledHmmLikelihood , bpp::RescaledHmmLikelihood
• getHiddenStatesPosteriorProbabilitiesForASite() : bpp::HmmLikelihood , bpp::LogsumHmmLikelihood , bpp::LowMemoryRescaledHmmLikelihood , bpp::RescaledHmmLikelihood
• getHmmEmissionProbabilities() : bpp::HmmLikelihood , bpp::LogsumHmmLikelihood , bpp::LowMemoryRescaledHmmLikelihood , bpp::RescaledHmmLikelihood
• getHmmStateAlphabet() : bpp::AbstractHmmTransitionMatrix , bpp::HmmEmissionProbabilities , bpp::HmmLikelihood , bpp::HmmTransitionMatrix , bpp::LogsumHmmLikelihood , bpp::LowMemoryRescaledHmmLikelihood , bpp::RescaledHmmLikelihood
• getHmmTransitionMatrix() : bpp::HmmLikelihood , bpp::LogsumHmmLikelihood , bpp::LowMemoryRescaledHmmLikelihood , bpp::RescaledHmmLikelihood
• getId() : bpp::AliasParameterListener , bpp::MatrixTools , bpp::ParameterListener
• getIInfCumulativeProbability() : bpp::AbstractDiscreteDistribution , bpp::DiscreteDistributionInterface
• getImagEigenValues() : bpp::EigenValue< Real >
• getIncomingEdges() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E > , bpp::GlobalGraph , bpp::Graph
• getIncomingNeighbors() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E > , bpp::GlobalGraph , bpp::Graph
• getIndependentParameters() : bpp::AbstractParameterAliasable , bpp::ParameterAliasable , bpp::ParameterAliasableAdapter
• getInfCumulativeProbability() : bpp::AbstractDiscreteDistribution , bpp::DiscreteDistributionInterface
• getInterval() : bpp::AbstractNumericalDerivative , bpp::NumericalDerivativeInterface
• getIntParameter() : bpp::ApplicationTools
• getIterationType() : bpp::MetaOptimizerInfos
• getKeys() : bpp::MapTools
• getL() : bpp::LUDecomposition< Real >
• getLeavesFromNode() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E > , bpp::GlobalGraph , bpp::Graph
• getLeavesUnderNode() : bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl > , bpp::AssociationDAGraphObserver< N, E > , bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl > , bpp::AssociationTreeGraphObserver< N, E > , bpp::DAGraph , bpp::DAGraphImpl< GraphImpl > , bpp::TreeGraph , bpp::TreeGraphImpl< GraphImpl >
• getLeftSon() : bpp::BinaryOperator
• getLikelihoodForASite() : bpp::HmmLikelihood , bpp::LogsumHmmLikelihood , bpp::LowMemoryRescaledHmmLikelihood , bpp::RescaledHmmLikelihood
• getLikelihoodForEachSite() : bpp::HmmLikelihood , bpp::LogsumHmmLikelihood , bpp::LowMemoryRescaledHmmLikelihood , bpp::RescaledHmmLikelihood
• getLimit() : bpp::ConstraintInterface , bpp::IntervalConstraint
• getLogLikelihood() : bpp::HmmLikelihood , bpp::LogsumHmmLikelihood , bpp::LowMemoryRescaledHmmLikelihood , bpp::RescaledHmmLikelihood
• getLowerBound() : bpp::AbstractDiscreteDistribution , bpp::ConstantDistribution , bpp::DiscreteDistributionInterface , bpp::IntervalConstraint , bpp::OutOfRangeException , bpp::SimpleDiscreteDistribution
• getMarginColumns() : bpp::ContingencyTableTest
• getMarginRows() : bpp::ContingencyTableTest
• getMatchingParameterNames() : bpp::ParameterList
• getMatrixParameter() : bpp::ApplicationTools
• getMessageHandler() : bpp::AbstractOptimizer , bpp::OptimizerInterface
• getMethod() : bpp::Simplex
• getName() : bpp::AliasParameterListener , bpp::BetaDiscreteDistribution , bpp::ConstantDistribution , bpp::ContingencyTableTest , bpp::DirichletDiscreteDistribution , bpp::DiscreteDistributionInterface , bpp::ExponentialDiscreteDistribution , bpp::FunctionOperator< F > , bpp::GammaDiscreteDistribution , bpp::GaussianDiscreteDistribution , bpp::InvariantMixedDiscreteDistribution , bpp::MathOperator , bpp::MetaOptimizerInfos , bpp::MixtureOfDiscreteDistributions , bpp::Parameter , bpp::SimpleDiscreteDistribution , bpp::StatTest , bpp::TableNameNotFoundException , bpp::TruncatedExponentialDiscreteDistribution , bpp::UniformDiscreteDistribution
• getNamespace() : bpp::AbstractParametrizable , bpp::FunctionWrapper , bpp::Parametrizable , bpp::ParametrizableAdapter
• getNbOfKeptAxes() : bpp::DualityDiagram
• getNeighbors() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E > , bpp::GlobalGraph , bpp::Graph
• getNeighbors_() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::GlobalGraph
• getNextLine() : bpp::FileTools
• getNode() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E >
• getNodeFromGraphid() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E >
• getNodeGraphid() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E >
• getNodeIndex() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E >
• getNodeIndexes() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E >
• getNodePathBetweenTwoNodes() : bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl > , bpp::AssociationTreeGraphObserver< N, E > , bpp::TreeGraph , bpp::TreeGraphImpl< GraphImpl >
• getNodes() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::GlobalGraph , bpp::Graph
• getNodesFromGraphid() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E >
• getNProbability() : bpp::MixtureOfDiscreteDistributions
• getNumberOfCategories() : bpp::AbstractDiscreteDistribution , bpp::DirichletDiscreteDistribution , bpp::DiscreteDistributionInterface , bpp::MultipleDiscreteDistribution
• getNumberOfColors() : bpp::AbstractColorSet , bpp::ColorManager< CodeType > , bpp::ColorSet , bpp::XFigColorManager
• getNumberOfColumns() : bpp::ColMatrix< Scalar > , bpp::DataTable , bpp::LinearMatrix< Scalar > , bpp::Matrix< Scalar > , bpp::RowMatrix< Scalar > , bpp::Table< T >
• getNumberOfDimensions() : bpp::ParameterGrid
• getNumberOfDistributions() : bpp::MixtureOfDiscreteDistributions
• getNumberOfEdges() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::GlobalGraph , bpp::Graph
• getNumberOfEvaluations() : bpp::AbstractOptimizer , bpp::OptimizerInterface
• getNumberOfFathers() : bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl > , bpp::AssociationDAGraphObserver< N, E > , bpp::DAGraph , bpp::DAGraphImpl< GraphImpl >
• getNumberOfFonts() : bpp::AbstractFontManager< CodeType > , bpp::FontManager< CodeType >
• getNumberOfIncomingNeighbors() : bpp::GlobalGraph , bpp::Graph
• getNumberOfIndependentParameters() : bpp::AbstractParameterAliasable , bpp::ParameterAliasable , bpp::ParameterAliasableAdapter
• getNumberOfLeaves() : bpp::AssociationGraphImplObserver< N, E, GraphImpl >
• getNumberOfNeighbors() : bpp::GlobalGraph , bpp::Graph
• getNumberOfNodes() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::GlobalGraph , bpp::Graph
• getNumberOfObjects() : bpp::ParametrizableCollection< N >
• getNumberOfOptimizers() : bpp::MetaOptimizerInfos
• getNumberOfOutgoingNeighbors() : bpp::GlobalGraph , bpp::Graph
• getNumberOfParameters() : bpp::AbstractParametrizable , bpp::DirectionFunction , bpp::FunctionWrapper , bpp::Parametrizable , bpp::ParametrizableAdapter
• getNumberOfPositions() : bpp::HmmEmissionProbabilities
• getNumberOfRows() : bpp::ColMatrix< Scalar > , bpp::DataTable , bpp::LinearMatrix< Scalar > , bpp::Matrix< Scalar > , bpp::RowMatrix< Scalar > , bpp::Table< T >
• getNumberOfSons() : bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl > , bpp::AssociationDAGraphObserver< N, E > , bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl > , bpp::AssociationTreeGraphObserver< N, E > , bpp::DAGraph , bpp::DAGraphImpl< GraphImpl > , bpp::TreeGraph , bpp::TreeGraphImpl< GraphImpl >
• getNumberOfStates() : bpp::AbstractHmmTransitionMatrix , bpp::HmmStateAlphabet , bpp::HmmTransitionMatrix
• getOptimizationProgressCharacter() : bpp::AbstractOptimizer
• getOptimizer() : bpp::AbstractOptimizationStopCondition , bpp::MetaOptimizerInfos , bpp::OptimizationEvent , bpp::OptimizationStopCondition
• getOriginalValue() : bpp::IntervalTransformedParameter , bpp::PlaceboTransformedParameter , bpp::RTransformedParameter , bpp::TransformedParameter
• getOutgoingEdges() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E > , bpp::GlobalGraph , bpp::Graph
• getOutgoingNeighbors() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E > , bpp::GlobalGraph , bpp::Graph
• getParam() : bpp::BppApplication
• getParameter() : bpp::AbstractParametrizable , bpp::ApplicationTools , bpp::ParameterList
• getParameter_() : bpp::AbstractOptimizer , bpp::AbstractParametrizable
• getParameterGrid() : bpp::NumCalcApplicationTools
• getParameterNames() : bpp::MetaOptimizerInfos , bpp::ParameterList
• getParameterNameWithoutNamespace() : bpp::AbstractParametrizable , bpp::FunctionWrapper , bpp::Parametrizable , bpp::ParametrizableAdapter
• getParameters() : bpp::AbstractOptimizer , bpp::AbstractParametrizable , bpp::DirectionFunction , bpp::FunctionWrapper , bpp::OptimizerInterface , bpp::Parametrizable , bpp::ParametrizableAdapter
• getParameters_() : bpp::AbstractOptimizer , bpp::AbstractParametrizable , bpp::DirectionFunction , bpp::FunctionWrapper , bpp::Parametrizable
• getParametersForObject() : bpp::ParametrizableCollection< N >
• getParameterValue() : bpp::AbstractOptimizer , bpp::AbstractParametrizable , bpp::FunctionWrapper , bpp::OptimizerInterface , bpp::ParameterList , bpp::Parametrizable , bpp::ParametrizableAdapter
• getParameterWithNamespace_() : bpp::AbstractParametrizable
• getParams() : bpp::BppApplication
• getParent() : bpp::FileTools
• getPij() : bpp::AutoCorrelationTransitionMatrix , bpp::FullHmmTransitionMatrix , bpp::HmmTransitionMatrix
• getPivot() : bpp::LUDecomposition< Real >
• getPoints() : bpp::ParameterGrid
• getPointsForDimension() : bpp::ParameterGrid
• getPrecision() : bpp::AbstractOutputStream , bpp::IntervalConstraint , bpp::OutputStream , bpp::Parameter
• getPrincipalAxes() : bpp::DualityDiagram
• getPrincipalComponents() : bpp::DualityDiagram
• getProbabilities() : bpp::AbstractDiscreteDistribution , bpp::DiscreteDistributionInterface
• getProbability() : bpp::AbstractDiscreteDistribution , bpp::DirichletDiscreteDistribution , bpp::DiscreteDistributionInterface , bpp::MultipleDiscreteDistribution
• getProfiler() : bpp::AbstractOptimizer , bpp::OptimizerInterface
• getPSum() : bpp::DownhillSimplexMethod
• getPValue() : bpp::ContingencyTableTest , bpp::StatTest
• getRange() : bpp::MultiRange< T > , bpp::RangeCollection< T > , bpp::RangeSet< T >
• getRanges() : bpp::SimpleDiscreteDistribution
• getRealEigenValues() : bpp::EigenValue< Real >
• getRightSon() : bpp::BinaryOperator
• getRoot() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E > , bpp::GlobalGraph , bpp::Graph
• getRootIndex() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E >
• getRow() : bpp::DataTable , bpp::RowMatrix< Scalar > , bpp::Table< T >
• getRowCoordinates() : bpp::DualityDiagram
• getRowName() : bpp::DataTable , bpp::Table< T >
• getRowNames() : bpp::DataTable , bpp::Table< T >
• getRowWeights() : bpp::DualityDiagram
• getSample() : bpp::RandomTools
• getSecondOrderDerivableFunction() : bpp::NewtonOneDimension
• getSecondOrderDerivative() : bpp::AbstractHmmLikelihood , bpp::AbstractNumericalDerivative , bpp::BinaryOperator , bpp::ComputationTree , bpp::ConstantOperator , bpp::FivePointsNumericalDerivative , bpp::FunctionOperator< F > , bpp::InfinityDerivableSecondOrderWrapper , bpp::IntervalTransformedParameter , bpp::MathOperator , bpp::NegativeOperator , bpp::Operator , bpp::PlaceboTransformedParameter , bpp::ReparametrizationDerivableSecondOrderWrapper , bpp::RTransformedParameter , bpp::SecondOrderDerivable , bpp::SecondOrderDerivableWrapper , bpp::TransformedParameter , bpp::TwoPointsNumericalDerivative
• getSecondOrderDerivative_() : bpp::FunctionOperator< F >
• getSeries() : bpp::Font
• getSet() : bpp::RangeSet< T >
• getSetOfAllLeaves() : bpp::GlobalGraph , bpp::Graph
• getShape() : bpp::Font
• getSize() : bpp::Font
• getSon() : bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl > , bpp::AssociationDAGraphObserver< N, E > , bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl > , bpp::AssociationTreeGraphObserver< N, E > , bpp::MathOperator , bpp::NegativeOperator
• getSons() : bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl > , bpp::AssociationDAGraphObserver< N, E > , bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl > , bpp::AssociationTreeGraphObserver< N, E > , bpp::DAGraph , bpp::DAGraphImpl< GraphImpl > , bpp::TreeGraph , bpp::TreeGraphImpl< GraphImpl >
• getSSupCumulativeProbability() : bpp::AbstractDiscreteDistribution , bpp::DiscreteDistributionInterface
• getState() : bpp::HmmStateAlphabet
• getStates() : bpp::StateChangedEvent
• getStatistic() : bpp::ContingencyTableTest , bpp::StatTest
• getStopCondition() : bpp::AbstractOptimizer , bpp::OptimizerInterface
• getStringParameter() : bpp::ApplicationTools
• getStyle() : bpp::Font
• getSubtreeEdges() : bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl > , bpp::AssociationTreeGraphObserver< N, E > , bpp::TreeGraph , bpp::TreeGraphImpl< GraphImpl >
• getSubtreeNodes() : bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl > , bpp::AssociationTreeGraphObserver< N, E > , bpp::TreeGraph , bpp::TreeGraphImpl< GraphImpl >
• getSumOfAllValues() : bpp::CorrespondenceAnalysis
• getSupCumulativeProbability() : bpp::AbstractDiscreteDistribution , bpp::DiscreteDistributionInterface
• getSymbol() : bpp::BinaryOperator
• getTime() : bpp::ApplicationTools
• getToken() : bpp::StringTokenizer
• getTokens() : bpp::StringTokenizer
• getTolerance() : bpp::AbstractOptimizationStopCondition , bpp::OptimizationStopCondition
• getTop() : bpp::GlobalGraph , bpp::Graph
• getTotalNumberOfPoints() : bpp::ParameterGrid
• getU() : bpp::LUDecomposition< Real >
• getUnparsedArguments() : bpp::BppODiscreteDistributionFormat , bpp::IDiscreteDistribution
• getUpperBound() : bpp::AbstractDiscreteDistribution , bpp::ConstantDistribution , bpp::DiscreteDistributionInterface , bpp::IntervalConstraint , bpp::OutOfRangeException , bpp::SimpleDiscreteDistribution
• getV() : bpp::EigenValue< Real >
• getValue() : bpp::BinaryOperator , bpp::BppBoolean , bpp::ComputationTree , bpp::ConstantOperator , bpp::DirectionFunction , bpp::FivePointsNumericalDerivative , bpp::FunctionInterface , bpp::FunctionOperator< F > , bpp::FunctionWrapper , bpp::InfinityFunctionWrapper , bpp::LogsumHmmLikelihood , bpp::LowMemoryRescaledHmmLikelihood , bpp::MathOperator , bpp::NegativeOperator , bpp::Number< T > , bpp::Operator , bpp::Parameter , bpp::ReparametrizationFunctionWrapper , bpp::RescaledHmmLikelihood , bpp::TestFunction , bpp::ThreePointsNumericalDerivative , bpp::TwoPointsNumericalDerivative
• getValue_() : bpp::FunctionOperator< F >
• getValueCategory() : bpp::AbstractDiscreteDistribution , bpp::DirichletDiscreteDistribution , bpp::DiscreteDistributionInterface , bpp::MultipleDiscreteDistribution
• getValues() : bpp::MapTools
• getVector() : bpp::AttributesTools , bpp::NumCalcApplicationTools , bpp::VectorException< T >
• getVectorOfVectorsParameter() : bpp::ApplicationTools
• getVectorParameter() : bpp::ApplicationTools
• getVerbose() : bpp::AbstractOptimizer , bpp::OptimizerInterface
• getWarningLevel() : bpp::BppApplication
• getWeight() : bpp::Font
• getX() : bpp::Point2D< T >
• getXUnit() : bpp::AbstractGraphicDevice , bpp::GraphicDevice
• getY() : bpp::Point2D< T >
• getYUnit() : bpp::AbstractGraphicDevice , bpp::GraphicDevice
• giveIntRandomNumberBetweenZeroAndEntry() : bpp::RandomTools
• givenRanges_ : bpp::SimpleDiscreteDistribution
• giveRandomNumberBetweenZeroAndEntry() : bpp::RandomTools
• GLIMIT : bpp::OneDimensionOptimizationTools
• GlobalGraph() : bpp::GlobalGraph
• GOLDEN_RATIO_C() : bpp::NumConstants
• GOLDEN_RATIO_PHI() : bpp::NumConstants
• GOLDEN_RATIO_R() : bpp::NumConstants
• GoldenSectionSearch() : bpp::GoldenSectionSearch
• gradient() : bpp::ColorTools
• gradient_ : bpp::BfgsMultiDimensions
• GraphicDevice() : bpp::GraphicDevice
• graphidToE_ : bpp::AssociationGraphImplObserver< N, E, GraphImpl >
• graphidToN_ : bpp::AssociationGraphImplObserver< N, E, GraphImpl >
• gray() : bpp::ColorTools
• GREEN : bpp::ColorTools
• green_ : bpp::RGBColor
• grid_ : bpp::ParameterGrid
• GSSStopCondition : bpp::GoldenSectionSearch , bpp::GoldenSectionSearch::GSSStopCondition