bpp-core3  3.0.0
bpp::ComputationTree Member List

This is the complete list of members for bpp::ComputationTree, including all inherited members.

addEdgeIndex(const Eref edgeObject)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
addNodeIndex(const Nref nodeObject)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
addSon(const std::shared_ptr< N > nodeObject, const std::shared_ptr< N > sonNodeObject, const std::shared_ptr< E > edgeObject=0)bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::allEdgesIterator()=0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::allEdgesIterator()bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::allEdgesIterator() constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
bpp::allNodesIterator()=0bpp::AssociationGraphObserver< N, E >pure virtual
bpp::allNodesIterator() const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::allNodesIterator()bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::allNodesIterator() constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::associateEdge(std::shared_ptr< E > edgeObject, EdgeGraphid edge)=0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::associateEdge(Eref edgeObject, EdgeGraphid graphEdge)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::associateNode(std::shared_ptr< N > nodeObject, NodeGraphid node)=0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::associateNode(Nref nodeObject, NodeGraphid graphNode)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
AssociationGraphImplObserver(bool directed=false)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
AssociationGraphImplObserver(std::shared_ptr< TreeGraphImpl > subjectGraph=00)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
AssociationGraphImplObserver(AssociationGraphImplObserver< N2, E2, TreeGraphImpl > const &graphObserver)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
AssociationGraphImplObserver(AssociationGraphImplObserver< N, E, TreeGraphImpl > const &graphObserver)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
AssociationTreeGraphImplObserver(bool rooted=false)bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inline
AssociationTreeGraphImplObserver(std::shared_ptr< TreeGraphImpl > subjectTreeGraph)bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inline
AssociationTreeGraphImplObserver(bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl > const &treeGraphObserver)bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inline
AssociationTreeGraphImplObserver(bpp::AssociationTreeGraphImplObserver< N2, E2, TreeGraphImpl > const &treeGraphObserver)bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inline
branchesIterator(std::shared_ptr< N > node)bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
branchesIterator(std::shared_ptr< N > node) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
clone() constbpp::ComputationTreeinlinevirtual
ComputationTree(const std::string &formula, const std::map< std::string, std::shared_ptr< FunctionInterface >> &functionNames)bpp::ComputationTree
copy(const A &a, typename std::enable_if< !std::is_base_of< B, A >::value &&!std::is_abstract< B >::value, B *>::type *=0)bpp::AssociationGraphObserver< N, E >inlinestatic
copy(const A &a, typename std::enable_if< !std::is_base_of< B, A >::value &&std::is_abstract< B >::value, B *>::type *=0)bpp::AssociationGraphObserver< N, E >inlinestatic
copy(const A &a, typename std::enable_if< std::is_base_of< B, A >::value &&!std::is_abstract< A >::value, B *>::type *=0)bpp::AssociationGraphObserver< N, E >inlinestatic
copy(const A &a, typename std::enable_if< std::is_base_of< B, A >::value &&std::is_abstract< A >::value &&std::is_base_of< Clonable, A >::value, B *>::type *=0)bpp::AssociationGraphObserver< N, E >inlinestatic
copy(const A &a, typename std::enable_if< std::is_base_of< B, A >::value &&std::is_abstract< A >::value &&!std::is_base_of< Clonable, A >::value, B *>::type *=0)bpp::AssociationGraphObserver< N, E >inlinestatic
bpp::createNode(std::shared_ptr< N > newNodeObject)=0bpp::AssociationGraphObserver< N, E >pure virtual
bpp::createNode(std::shared_ptr< N > objectOriginNode, std::shared_ptr< N > newNodeObject, std::shared_ptr< E > newEdgeObject=00)=0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::createNode(Nref nodeObject)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::createNode(Nref objectOriginNode, Nref newNodeObject, Eref newEdgeObject=00)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::deletedEdgesUpdate(const std::vector< unsigned int > &edgesToDelete)=0bpp::GraphObserverpure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::deletedEdgesUpdate(const std::vector< unsigned int > &edgesToDelete)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::deletedNodesUpdate(const std::vector< unsigned int > &nodesToDelete)=0bpp::GraphObserverpure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::deletedNodesUpdate(const std::vector< unsigned int > &nodesToDelete)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::deleteNode(std::shared_ptr< N > nodeObject)=0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::deleteNode(Nref nodeObject)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::dissociateEdge(std::shared_ptr< E > edgeObject)=0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::dissociateEdge(Eref edgeObject)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::dissociateNode(std::shared_ptr< N > nodeObject)=0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::dissociateNode(Nref nodeObject)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
EdgeGraphid typedefbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >
EdgeIndex typedefbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >
EdgeIterator typedefbpp::AssociationTreeGraphObserver< N, E >
edgeToString(const Eref edgeObject) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
Eref typedefbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >
bpp::getAllEdges() const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getAllEdges() constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::getAllEdgesIndexes() const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getAllEdgesIndexes() constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::getAllInnerNodes() const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getAllInnerNodes() constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::getAllInnerNodesIndexes() const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getAllInnerNodesIndexes() constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::getAllLeaves() const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getAllLeaves() constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::getAllLeavesIndexes() const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getAllLeavesIndexes() constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::getAllNodes() const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getAllNodes() constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::getAllNodesIndexes() const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getAllNodesIndexes() constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
getBranches(const std::shared_ptr< N > node) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
getBranches(const NodeIndex node) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
getDegree(const Nref node) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
bpp::getEdge(EdgeIndex edgeIndex) const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getEdge(EdgeIndex edge) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::getEdgeFromGraphid(EdgeGraphid)=0bpp::AssociationGraphObserver< N, E >pure virtual
bpp::getEdgeFromGraphid(EdgeGraphid) const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getEdgeFromGraphid(EdgeGraphid edge)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getEdgeFromGraphid(EdgeGraphid edge) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::getEdgeGraphid(const std::shared_ptr< E > edgeObject) const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getEdgeGraphid(const Eref edgeObject) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::getEdgeIndex(const std::shared_ptr< E > edgeObject) const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getEdgeIndex(const Eref edgeObject) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::getEdgeIndexes(std::vector< std::shared_ptr< E >> edgeObjects) const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getEdgeIndexes(std::vector< Eref > edges) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
bpp::getEdgeLinking(std::shared_ptr< N > nodeA, std::shared_ptr< N > nodeB) const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getEdgeLinking(Nref nodeA, Nref nodeB) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
getEdgePathBetweenTwoNodes(const std::shared_ptr< N > nodeA, const std::shared_ptr< N > nodeB) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
getEdgePathBetweenTwoNodes(const NodeIndex nodeA, const NodeIndex nodeB, bool includeAncestor=true) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inline
bpp::getEdges(const std::shared_ptr< N > node) const =0bpp::AssociationGraphObserver< N, E >pure virtual
bpp::getEdges(NodeIndex node) const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getEdges(const Nref node) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getEdges(NodeIndex node) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::getEdgesFromGraphid(std::vector< EdgeGraphid >) const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getEdgesFromGraphid(std::vector< EdgeGraphid > edges) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
getEdgeToFather(const std::shared_ptr< N > nodeObject) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
getEdgeToFather(const NodeIndex index) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
getFatherOfEdge(const std::shared_ptr< E > edge) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
getFatherOfEdge(const EdgeIndex edge) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
getFatherOfNode(const std::shared_ptr< N > nodeObject) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
getFirstOrderDerivative(const std::string &variable) constbpp::ComputationTreeinline
getGraph() constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
getGraph()bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
bpp::getIncomingEdges(const std::shared_ptr< N > node) const =0bpp::AssociationGraphObserver< N, E >pure virtual
bpp::getIncomingEdges(NodeIndex node) const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getIncomingEdges(const Nref node) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getIncomingEdges(NodeIndex node) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::getIncomingNeighbors(const std::shared_ptr< N > node) const =0bpp::AssociationGraphObserver< N, E >pure virtual
bpp::getIncomingNeighbors(NodeIndex node) const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getIncomingNeighbors(const Nref node) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getIncomingNeighbors(NodeIndex node) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::getLeavesFromNode(std::shared_ptr< N > node, unsigned int maxDepth) const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getLeavesFromNode(Nref node, unsigned int maxDepth) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
getLeavesUnderNode(std::shared_ptr< N > node) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
getLeavesUnderNode(NodeIndex node) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inline
bpp::getNeighbors(const std::shared_ptr< N > node) const =0bpp::AssociationGraphObserver< N, E >pure virtual
bpp::getNeighbors(NodeIndex node) const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getNeighbors(const Nref node) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getNeighbors(NodeIndex node) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::getNode(NodeIndex nodeIndex) const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getNode(NodeIndex node) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::getNodeFromGraphid(NodeGraphid) const =0bpp::AssociationGraphObserver< N, E >pure virtual
bpp::getNodeFromGraphid(NodeGraphid)=0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getNodeFromGraphid(NodeGraphid node)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getNodeFromGraphid(NodeGraphid node) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::getNodeGraphid(const std::shared_ptr< N > nodeObject) const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getNodeGraphid(const Nref nodeObject) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::getNodeIndex(const std::shared_ptr< N > nodeObject) const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getNodeIndex(const Nref nodeObject) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::getNodeIndexes(std::vector< std::shared_ptr< N >> nodeObjects) const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getNodeIndexes(std::vector< Nref > nodes) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
getNodePathBetweenTwoNodes(const std::shared_ptr< N > nodeA, const std::shared_ptr< N > nodeB, bool includeAncestor=true) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
getNodePathBetweenTwoNodes(const NodeIndex nodeA, const NodeIndex nodeB, bool includeAncestor=true) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inline
getNodes(Eref edge) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
bpp::getNodesFromGraphid(std::vector< NodeGraphid >) const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getNodesFromGraphid(std::vector< NodeGraphid > nodes) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
getNumberOfEdges() constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
getNumberOfLeaves() constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
getNumberOfNodes() constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
getNumberOfSons(const std::shared_ptr< N > node) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::getOutgoingEdges(const std::shared_ptr< N > node) const =0bpp::AssociationGraphObserver< N, E >pure virtual
bpp::getOutgoingEdges(NodeIndex node) const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getOutgoingEdges(const Nref node) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getOutgoingEdges(NodeIndex node) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::getOutgoingNeighbors(const std::shared_ptr< N > node) const =0bpp::AssociationGraphObserver< N, E >pure virtual
bpp::getOutgoingNeighbors(NodeIndex node) const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getOutgoingNeighbors(const Nref node) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getOutgoingNeighbors(NodeIndex node) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::getRoot() const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getRoot() constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::getRootIndex() const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::getRootIndex() constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
getSecondOrderDerivative(const std::string &variable) constbpp::ComputationTreeinline
getSon(const std::shared_ptr< E > edge) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
getSon(const EdgeIndex edge) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
getSons(const std::shared_ptr< N > node) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
getSons(const NodeIndex node) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
getSubtreeEdges(const std::shared_ptr< N > localRoot) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
getSubtreeEdges(const NodeIndex localRoot) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inline
getSubtreeNodes(const std::shared_ptr< N > localRoot) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
getSubtreeNodes(const NodeIndex localRoot) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inline
getValue() constbpp::ComputationTreeinline
bpp::hasEdge(EdgeIndex edgeIndex) const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::hasEdge(Eref edgeObject) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
AssociationGraphImplObserver< N, E, TreeGraphImpl >::hasEdge(EdgeIndex edge) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::hasEdgeIndex(const std::shared_ptr< E > edgeObject) const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::hasEdgeIndex(const Eref edgeObject) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
hasFather(const std::shared_ptr< N > nodeObject) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
hasFather(const NodeIndex index) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::hasNode(NodeIndex nodeIndex) const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::hasNode(Nref nodeObject) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
AssociationGraphImplObserver< N, E, TreeGraphImpl >::hasNode(NodeIndex node) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::hasNodeIndex(const std::shared_ptr< N > nodeObject) const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::hasNodeIndex(const Nref nodeObject) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::incomingEdgesIterator(std::shared_ptr< N > node)=0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::incomingEdgesIterator(Nref node)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::incomingEdgesIterator(Nref node) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
bpp::incomingNeighborNodesIterator(std::shared_ptr< N > node)=0bpp::AssociationGraphObserver< N, E >pure virtual
bpp::incomingNeighborNodesIterator(std::shared_ptr< N > node) const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::incomingNeighborNodesIterator(Nref node)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::incomingNeighborNodesIterator(Nref node) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
isAllSum()bpp::ComputationTree
isLeaf(const Nref node) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
isLeaf(const NodeIndex nodeid) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
isRooted() constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
isValid() constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::link(std::shared_ptr< N > nodeObjectA, std::shared_ptr< N > nodeObjectB, std::shared_ptr< E > edgeObject=00)=0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::link(Nref nodeObjectA, Nref nodeObjectB, Eref edgeObject=00)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
MRCA(const std::vector< std::shared_ptr< N >> vNodeObject) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inline
NodeGraphid typedefbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >
NodeIndex typedefbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >
NodeIterator typedefbpp::AssociationTreeGraphObserver< N, E >
nodeToString(const Nref nodeObject) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
Nref typedefbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >
operator=(bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl > const &treeGraphObserver)bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inline
AssociationGraphImplObserver< N, E, TreeGraphImpl >::operator=(bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl > const &graphObserver)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
bpp::outgoingEdgesIterator(std::shared_ptr< N > node)=0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::outgoingEdgesIterator(Nref node)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::outgoingEdgesIterator(Nref node) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
bpp::outgoingNeighborNodesIterator(std::shared_ptr< N > node)=0bpp::AssociationGraphObserver< N, E >pure virtual
bpp::outgoingNeighborNodesIterator(std::shared_ptr< N > node) const =0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::outgoingNeighborNodesIterator(Nref node)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::outgoingNeighborNodesIterator(Nref node) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
output() constbpp::ComputationTree
outputToDot(const std::string &fname, const std::string &name) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
outputToDot(std::ostream &out, const std::string &name) constbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
readFormula(const std::string &formula, const std::map< std::string, std::shared_ptr< FunctionInterface >> &functionNames)bpp::ComputationTreeinline
readFormula_(const std::string &formula, const std::map< std::string, std::shared_ptr< FunctionInterface >> &functionNames)bpp::ComputationTreeprivate
removeSon(const std::shared_ptr< N > node, const std::shared_ptr< N > son)bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
removeSons(const std::shared_ptr< N > node)bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
rootAt(const std::shared_ptr< N > root)bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::setEdgeIndex(const std::shared_ptr< E > edgeObject, EdgeIndex index)=0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::setEdgeIndex(const Eref edgeObject, EdgeIndex index)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::setEdgeLinking(std::shared_ptr< N > nodeA, std::shared_ptr< N > nodeB, std::shared_ptr< E > edge)=0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::setEdgeLinking(Nref nodeA, Nref nodeB, Eref edge)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
setFather(const std::shared_ptr< N > nodeObject, const std::shared_ptr< N > fatherNodeObject, const std::shared_ptr< E > edgeObject=0)bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
bpp::setNodeIndex(const std::shared_ptr< N > nodeObject, NodeIndex index)=0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::setNodeIndex(const Nref nodeObject, NodeIndex index)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
setRoot(const Nref newRoot)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
sonsIterator(std::shared_ptr< N > node)bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
sonsIterator(std::shared_ptr< N > node) constbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
subjectGraph_bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >protected
bpp::unlink(std::shared_ptr< N > nodeObjectA, std::shared_ptr< N > nodeObjectB)=0bpp::AssociationGraphObserver< N, E >pure virtual
AssociationGraphImplObserver< N, E, TreeGraphImpl >::unlink(Nref nodeObjectA, Nref nodeObjectB)bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inlinevirtual
~AssociationGraphImplObserver()bpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >inline
~AssociationTreeGraphImplObserver()bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >inline
~Clonable()=defaultbpp::Clonablevirtual