Class Hierarchy

Go to the graphical class hierarchy

This inheritance list is sorted roughly, but not completely, alphabetically:

[detail level 12345678]

Cbpp::AdaptiveKernelDensityEstimation	Density estimation using the adaptive kernel method
Cbpp::Graph::ALLGRAPHITER	Define categories of iterators
Cbpp::ApplicationTools	This class provides some common tools for developping applications
Cbpp::AttributesTools	Some functions to deal with attributes, i.e. parameters passed to a program/method
Cbpp::BppApplication
Cbpp::Bracket
Cbpp::BracketPoint
►Cbpp::Clonable	The Clonable interface (allow an object to be cloned)
Cbpp::BppBoolean	The BppBoolean object class. This class extends the bool type to support the Clonable interface
►Cbpp::BppNumberI	The Number interface
Cbpp::BppNotANumber
Cbpp::Number< T >	The Number object template class
►Cbpp::Number< double >
Cbpp::BppDouble	An object wrapper for double values
►Cbpp::Number< int >
Cbpp::BppInteger	An object wrapper for integer values
►Cbpp::Number< unsigned int >
Cbpp::BppUnsignedInteger	An object wrapper for unsigned integer values
Cbpp::BppString	The BppString object class. This class extends the stl::string class to support the Clonable interface
Cbpp::BppVector< T >	The BppVector object class. This class extends the std::vector class to support the Clonable interface
►Cbpp::ConstraintInterface	The constraint interface
Cbpp::IntervalConstraint	An interval, either bounded or not, which can also have infinite bounds
Cbpp::DataTable	This class corresponds to a 'dataset', i.e. a table with data by rows and variable by columns
►Cbpp::DualityDiagram	The core class of a multivariate analysis
Cbpp::CorrespondenceAnalysis	This class allows to perform a correspondence analysis
Cbpp::PrincipalComponentAnalysis	This class allows to perform a principal component analysis
Cbpp::Font	Data structure for fonts
Cbpp::GlobalGraph
►Cbpp::GraphObserver	Defines a Graph Observer. It is a template which follows (subscribed to) a Graph. The graph and the graph observer communicate to keep them up-to-date each other. The observer is also an actor, since it can change the structure of the observed Graph
►Cbpp::AssociationGraphObserver< N, E >	Defines a Graph Associator. It is a template which follows (subscribed to) a Graph
►Cbpp::AssociationGraphImplObserver< N, E, DAGraphImpl >
Cbpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >
►Cbpp::AssociationGraphImplObserver< N, E, TreeGraphImpl >
►Cbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >
Cbpp::ComputationTree	Defines a Computation Tree based on Operators
►Cbpp::AssociationDAGraphObserver< N, E >	Defines a DA Graph Associator. It is a template which follows (subscribed to) a Graph
Cbpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl >
Cbpp::AssociationGraphImplObserver< N, E, GraphImpl >
►Cbpp::AssociationTreeGraphObserver< N, E >	Defines a Tree Graph Associator. It is a template which follows (subscribed to) a Graph
Cbpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl >
►Cbpp::Matrix< Scalar >	The matrix template interface
Cbpp::ColMatrix< Scalar >	Matrix storage by column
Cbpp::LinearMatrix< Scalar >	Matrix storage in one vector
Cbpp::RowMatrix< Scalar >	Matrix storage by row
Cbpp::RowMatrix< double >
Cbpp::RowMatrix< Real >
Cbpp::MetaOptimizerInfos	Provide a list of optimizer and corresponding options to be used with the MetaOptimizer class
►Cbpp::Operator	Interface of operator for numerical computation
Cbpp::BinaryOperator	Binary arithmetic operator for numerical computation
Cbpp::ConstantOperator	Constant (ie leaf) operator
Cbpp::FunctionOperator< F >	Implements a double operator (ie leaf in the computation tree) where value comes from a function
Cbpp::MathOperator	Implements a unary operator that applies a math (described in cmath) operator
Cbpp::NegativeOperator	Negative value for an operator
►Cbpp::OptimizationStopCondition	Interface for otimization stop condition objet
►Cbpp::AbstractOptimizationStopCondition	Partial implementation of the OptimizationStopCondition interface
Cbpp::BrentOneDimension::BODStopCondition
Cbpp::DownhillSimplexMethod::DSMStopCondition
Cbpp::FunctionStopCondition	Stop condition on function value
Cbpp::GoldenSectionSearch::GSSStopCondition
Cbpp::NewtonBacktrackOneDimension::NBODStopCondition
Cbpp::ParametersStopCondition	Stop condition on parameters
Cbpp::PowellMultiDimensions::PMDStopCondition
►Cbpp::OptimizerInterface	This is the basal interface for all optimization methods
►Cbpp::AbstractOptimizer	Partial implementation of the Optimizer interface
Cbpp::BfgsMultiDimensions	Broyden–Fletcher–Goldfarb–Shanno (BFGS) optimization method
Cbpp::BrentOneDimension	Brent's optimization for one parameter
Cbpp::ConjugateGradientMultiDimensions	Conjugate gradient optimization method
Cbpp::DownhillSimplexMethod	This implements the Downhill Simplex method in multidimensions
Cbpp::GoldenSectionSearch	Golden Section Search optimization algorithm for one parameter
Cbpp::MetaOptimizer	Meta-optimizer
Cbpp::NewtonBacktrackOneDimension	Newton's backtrack nearly optimization for one parameter
Cbpp::NewtonOneDimension	Newton's optimization for one parameter
Cbpp::PowellMultiDimensions	Powell's multi-dimensions optimization algorithm for one parameter
Cbpp::SimpleMultiDimensions	This Optimizer is a very simple multi-dimensions optimizer, calling a one dimensional optimizer on each parameter
Cbpp::SimpleNewtonMultiDimensions	This Optimizer is a simple multi-dimensions optimizer, calling the Newton one dimensional optimizer on each parameter
►Cbpp::OutputStream	OutputStream interface
►Cbpp::AbstractOutputStream	Helper implementation of the OutputStream interface
Cbpp::NullOutputStream	Null output stream (swich off output)
Cbpp::StdErr	Standard error stream
Cbpp::StdOut	Standard output stream
Cbpp::StlOutputStream	STL output stream
►Cbpp::StlOutputStreamWrapper	STL wrapper for output stream
Cbpp::StdStr	String output stream
►Cbpp::Parameter	This class is designed to facilitate the manipulation of parameters
Cbpp::AutoParameter	The AutoParameter class
►Cbpp::TransformedParameter	The TransformedParameter abstract class
Cbpp::IntervalTransformedParameter	Parameter transformation from ] a, b [ to ]-inf, + inf [
Cbpp::PlaceboTransformedParameter	'Placebo' parameter transformation from ] b, +inf [ or ] -inf, b [ to ]-inf, + inf [
Cbpp::RTransformedParameter	Parameter transformation from ] b, +inf [ or ] -inf, b [ to ]-inf, + inf [
Cbpp::ParameterEvent
Cbpp::ParameterList	The parameter list object
►Cbpp::ParameterListener	The parameter listener interface
Cbpp::AliasParameterListener	Inner listener class used by AbstractParameterAliasable
►Cbpp::Parametrizable	This is the interface for all objects that imply parameters
►Cbpp::AbstractParametrizable	A partial implementation of the Parametrizable interface
►Cbpp::AbstractParameterAliasable	A partial implementation of the Parametrizable interface
►Cbpp::AbstractDiscreteDistribution	Partial implementation of the DiscreteDistribution interface
Cbpp::BetaDiscreteDistribution	Discretized Beta distribution with parameters alpha and beta, on a given interval. On default, the interval is , but it can be restricted
Cbpp::ConstantDistribution	Constant discrete distribution
Cbpp::ExponentialDiscreteDistribution	Discretized Exponential distribution
Cbpp::GammaDiscreteDistribution	Discretized Gamma distribution with an offset
Cbpp::GaussianDiscreteDistribution	Discretized Gaussian distribution
Cbpp::InvariantMixedDiscreteDistribution	Discrete mixed distribution, with a one-category fixed value (called "invariant") and a user-specified multi-categories distribution
Cbpp::MixtureOfDiscreteDistributions	A Discrete distribution object defined by a vector of Discrete Distributions and a set of probabilities for these Discrete Distributions
Cbpp::SimpleDiscreteDistribution	A Discrete distribution object, where some specific probabilities are assigned to a finite set of values
Cbpp::TruncatedExponentialDiscreteDistribution	Discretized Truncated (on the right) Exponential distribution, where the probabilities are given the exponential, conditioned by the upper limit
Cbpp::UniformDiscreteDistribution	Discretized Uniform distribution. All categories are equidistributed all along a given interval
Cbpp::DirichletDiscreteDistribution	Discretized Dirichlet distribution. If the distribution is in n dimensions, the domain is the n-1 simplex
Cbpp::ParametrizableCollection< N >	Plain collection of parametrizable objects
►Cbpp::Simplex	A Simplex object, used to define sets of probabilities that sum 1
Cbpp::OrderedSimplex	Simplex where all values are in decreasing order
Cbpp::AutoCorrelationTransitionMatrix	Describe the auto-correlation probabilities inside hidden states of a Hidden Markov Model
Cbpp::FullHmmTransitionMatrix	Describe the transition probabilities between hidden states of a Hidden Markov Model
Cbpp::LogsumHmmLikelihood	A simple implementation of hidden Markov models recursion
Cbpp::LowMemoryRescaledHmmLikelihood	A modified implementation of the RescaledHmmLikelihood implementation, with lower memory usage
►Cbpp::ReparametrizationFunctionWrapper	Function wrapper that remove simple constraints on parameters
►Cbpp::ReparametrizationDerivableFirstOrderWrapper	Function wrapper that remove simple constraints on parameters. Also transform first order derivatives
Cbpp::ReparametrizationDerivableSecondOrderWrapper	Function wrapper that remove simple constraints on parameters. Also transform first and second order derivatives
Cbpp::RescaledHmmLikelihood	A simple implementation of hidden Markov models recursion
Cbpp::TestFunction	A simple function with two parameters, mostly for testing and debugging :)
►Cbpp::FunctionInterface	This is the function abstract class
Cbpp::DirectionFunction
►Cbpp::FirstOrderDerivable	This is the abstract class for first order derivable functions
►Cbpp::FirstOrderDerivableWrapper	General class that wraps a function into another one. This class is meant to be derivated and just provides a general framework
Cbpp::SecondOrderDerivableWrapper	General class that wraps a function into another one. This class is meant to be derivated and just provides a general framework
Cbpp::ReparametrizationDerivableFirstOrderWrapper	Function wrapper that remove simple constraints on parameters. Also transform first order derivatives
►Cbpp::SecondOrderDerivable	This is the abstract class for second order derivable functions
►Cbpp::HmmLikelihood	Basal interface for Hidden Markov Models likelihood computation
►Cbpp::AbstractHmmLikelihood	Partial impmementation of Hmm Likelihoods
Cbpp::LogsumHmmLikelihood	A simple implementation of hidden Markov models recursion
Cbpp::LowMemoryRescaledHmmLikelihood	A modified implementation of the RescaledHmmLikelihood implementation, with lower memory usage
Cbpp::RescaledHmmLikelihood	A simple implementation of hidden Markov models recursion
►Cbpp::NumericalDerivativeInterface	Numerical derivative function wrapper
►Cbpp::AbstractNumericalDerivative	Numerical derivative function wrapper, partial implementation
Cbpp::FivePointsNumericalDerivative	Five points numerical derivative function wrapper
Cbpp::ThreePointsNumericalDerivative	Three points numerical derivative function wrapper
Cbpp::TwoPointsNumericalDerivative	Two points numerical derivative function wrapper
Cbpp::ReparametrizationDerivableSecondOrderWrapper	Function wrapper that remove simple constraints on parameters. Also transform first and second order derivatives
Cbpp::SecondOrderDerivableWrapper	General class that wraps a function into another one. This class is meant to be derivated and just provides a general framework
►Cbpp::FunctionWrapper	General class that wraps a function into another one. This class is meant to be derivated and just provides a general framework
Cbpp::AbstractNumericalDerivative	Numerical derivative function wrapper, partial implementation
Cbpp::FirstOrderDerivableWrapper	General class that wraps a function into another one. This class is meant to be derivated and just provides a general framework
►Cbpp::InfinityFunctionWrapper	Wrapper class for optimization under constraints
►Cbpp::InfinityDerivableFirstOrderWrapper	Wrapper class for optimization under constraints
Cbpp::InfinityDerivableSecondOrderWrapper	Wrapper class for optimization under constraints
Cbpp::ReparametrizationFunctionWrapper	Function wrapper that remove simple constraints on parameters
Cbpp::TestFunction	A simple function with two parameters, mostly for testing and debugging :)
Cbpp::HmmEmissionProbabilities	Interface for computing emission probabilities in a Hidden Markov Model
Cbpp::HmmStateAlphabet	Hidden states alphabet
►Cbpp::HmmTransitionMatrix	Describe the transition probabilities between hidden states of a Hidden Markov Model
►Cbpp::AbstractHmmTransitionMatrix	Partial implementation of HmmTransitionMatrix
Cbpp::AutoCorrelationTransitionMatrix	Describe the auto-correlation probabilities inside hidden states of a Hidden Markov Model
Cbpp::FullHmmTransitionMatrix	Describe the transition probabilities between hidden states of a Hidden Markov Model
►Cbpp::ParameterAliasable	Extend the Parametrizable interface with support for parameter aliases
Cbpp::AbstractParameterAliasable	A partial implementation of the Parametrizable interface
►Cbpp::DiscreteDistributionInterface	Interface for discrete distribution objects
Cbpp::AbstractDiscreteDistribution	Partial implementation of the DiscreteDistribution interface
►Cbpp::MultipleDiscreteDistribution	Interface for multiple discrete distribution objects
Cbpp::DirichletDiscreteDistribution	Discretized Dirichlet distribution. If the distribution is in n dimensions, the domain is the n-1 simplex
►Cbpp::ParametrizableAdapter	A low-level implementation of the Parametrizable interface with void functions
Cbpp::DirectionFunction
Cbpp::ParameterAliasableAdapter	A low-level implementation of the ParameterAliasable interface with void functions
Cbpp::Point2D< T >	The Point2D class
Cbpp::Range< T >	The Range class, defining an interval
Cbpp::RGBColor	Describe a color according to its red, green and blue componants
►Cbpp::StatTest	Interface for statistical test results
Cbpp::ContingencyTableTest	Implements tests on contingency tables
Cbpp::Table< T >	This class corresponds to a 'dataset', i.e. a table with data by rows and variable by columns
Cbpp::ColorManager< CodeType >	Associate special colors to a code
►Cbpp::ColorManager< unsigned int >
Cbpp::XFigColorManager	Color manager for the XFig format
►Cbpp::ColorSet	Specify a set of color definitions
►Cbpp::AbstractColorSet	Partial implementation of the ColorSet interface
Cbpp::DefaultColorSet	Default color definitions
Cbpp::DvipsColorSet	The dvips color definitions
Cbpp::MolscriptColorSet	Molscript color definitions
Cbpp::RColorSet	R color definitions
Cbpp::ColorTools	Provide tools to deal with color objects
Cbpp::ContingencyTableGenerator	Generate a random contingency matrix with given marginal counts
Cbpp::CoordsTools	Some functions to deal with Point2D
►Cbpp::AssociationGraphObserver< N, E >::EdgeIterator
Cbpp::AssociationGraphImplObserver< N, E, GraphImpl >::EdgeIteratorClass< GraphIterator, is_const >
►Cbpp::Graph::EdgeIterator
Cbpp::EdgesIteratorClass< T, is_const >
Cbpp::EdgesIteratorClass< Graph::ALLGRAPHITER, is_const >
Cbpp::EdgesIteratorClass< Graph::INCOMINGNEIGHBORITER, is_const >
Cbpp::EdgesIteratorClass< Graph::OUTGOINGNEIGHBORITER, is_const >
Cbpp::EdgesIteratorClass< GraphIterator, is_const >
Cbpp::EigenValue< Real >	Computes eigenvalues and eigenvectors of a real (non-complex) matrix
►Cstd::exception	STL class
►Cbpp::Exception	Exception base class. Overload exception constructor (to control the exceptions mechanism). Destructor is already virtual (from std::exception)
Cbpp::BadIntegerException	Number exception: integers
Cbpp::BadNumberException	Number exception: doubles
Cbpp::BadSizeException	Wrong size exception class
Cbpp::DimensionException	Exception thrown when a dimension problem occured
Cbpp::DuplicatedTableColumnNameException	Excpetion thrown when attempting to duplicate a column name
Cbpp::DuplicatedTableRowNameException	Exception thrown when attempting to duplicate a row name
Cbpp::HmmBadStateException	Exception thrown when an unvalid state is requested
Cbpp::HmmUnvalidAlphabetException	Exception thrown when an unvalid alphabet is specified
Cbpp::IndexOutOfBoundsException	Index out of bounds exception class
Cbpp::IOException	The base class exception for IO error
Cbpp::KeyvalException	Exception thrown by the Keyval parser
Cbpp::NoTableColumnNamesException	Exception thrown when trying to retrieve a column by its name and no column names have been specified
Cbpp::NoTableRowNamesException	Exception thrown when trying to retrieve a row by its name and no row names have been specified
Cbpp::NotImplementedException	This exception is sent when a given method is not implemented
Cbpp::NullPointerException	The base class exception for NULL pointer error. This exception may be thrown when an unexpected NULL pointer is found
Cbpp::NumberFormatException	Number format exception
Cbpp::OutOfRangeException	Out of range exception class
►Cbpp::ParameterException	The parameter exception base class
Cbpp::ConstraintException	Exception thrown when a value do not match a given constraint
Cbpp::ParameterNotFoundException	Exception thrown when a parameter is not found, for instance in a ParameterList
Cbpp::TableColumnNamesException	General exception class dealing with column names
►Cbpp::TableNameNotFoundException	Exception thrown when a given name is not found is a DataTable object
Cbpp::TableColumnNameNotFoundException	Exception thrown when a given column name is not found is a DataTable object
Cbpp::TableRowNameNotFoundException	Exception thrown when a given row name is not found is a DataTable object
Cbpp::TableRowNamesException	General exception class dealing with row names
Cbpp::UnvalidFlagException
►Cbpp::VectorException< T >	General Exception dealing with vectors
Cbpp::ElementNotFoundException< T >	Exception thrown when a given element was not found in the vector
Cbpp::EmptyVectorException< T >	Exception thrown when an empty vector was found
Cbpp::ZeroDivisionException	The base class exception for zero division error
Cbpp::FileTools	Some utilitary functions to deal with files
►Cbpp::FontManager< CodeType >	Associate special fonts to a code
Cbpp::AbstractFontManager< CodeType >
►Cbpp::FontManager< int >
►Cbpp::AbstractFontManager< int >
Cbpp::XFigLaTeXFontManager	LaTeX font manager for the XFig format
Cbpp::XFigPostscriptFontManager	Postscript font manager for the XFig format
Cbpp::FunctionTools	This class contains static methods to deal with Function objects
►Cbpp::Graph
►Cbpp::DAGraph
Cbpp::DAGraphImpl< GraphImpl >
Cbpp::GlobalGraph
►Cbpp::TreeGraph
Cbpp::TreeGraphImpl< GraphImpl >
►Cbpp::GraphicDevice	Interface for all plotting devices
►Cbpp::AbstractGraphicDevice	Partial implementation of the GraphicDevice interface
Cbpp::PgfGraphicDevice	LaTeX Portable Graphic Format (Pgf) plotting format
Cbpp::SvgGraphicDevice	SVG plotting format
Cbpp::XFigGraphicDevice	XFig plotting format
►CGraphImpl
Cbpp::DAGraphImpl< GraphImpl >
Cbpp::TreeGraphImpl< GraphImpl >
Cbpp::Graph::INCOMINGNEIGHBORITER
Cbpp::IoDiscreteDistributionFactory	Utilitary class for creating discrete distribution readers and writers
►Cbpp::IOFormat	The IOFormat interface
►Cbpp::IoDiscreteDistribution	General interface for model I/O
►Cbpp::IDiscreteDistribution	General interface for distance matrix readers
Cbpp::BppODiscreteDistributionFormat	Discrete Distribution I/O in BppO format
►Cbpp::ODiscreteDistribution	General interface writers
Cbpp::BppODiscreteDistributionFormat	Discrete Distribution I/O in BppO format
►Cbpp::IOParametrizable	General interface for parametrizable Output
►Cbpp::OParametrizable	General interface writers
Cbpp::BppOParametrizableFormat	Parametrizable output in BppO format
Cbpp::KeyvalTools	Tools to deal with the keyval syntax
Cbpp::LUDecomposition< Real >	LU Decomposition
Cbpp::MapTools	A fiew tools working on map objects
Cbpp::MatrixTools	Functions dealing with matrices
►Cbpp::NeighborIteratorClass< is_const >	Abstract class for neighbor iterators
Cbpp::EdgesIteratorClass< Graph::INCOMINGNEIGHBORITER, is_const >
Cbpp::EdgesIteratorClass< Graph::OUTGOINGNEIGHBORITER, is_const >
Cbpp::NodesIteratorClass< Graph::INCOMINGNEIGHBORITER, is_const >
Cbpp::NodesIteratorClass< Graph::OUTGOINGNEIGHBORITER, is_const >
►Cbpp::AssociationGraphObserver< N, E >::NodeIterator
Cbpp::AssociationGraphImplObserver< N, E, GraphImpl >::NodeIteratorClass< GraphIterator, is_const >
►Cbpp::Graph::NodeIterator
Cbpp::NodesIteratorClass< T, is_const >
Cbpp::NodesIteratorClass< Graph::ALLGRAPHITER, is_const >
Cbpp::NodesIteratorClass< Graph::INCOMINGNEIGHBORITER, is_const >
Cbpp::NodesIteratorClass< Graph::OUTGOINGNEIGHBORITER, is_const >
Cbpp::NodesIteratorClass< GraphIterator, is_const >
Cbpp::NumCalcApplicationTools
Cbpp::NumConstants	This static class contains several useful constant values
Cbpp::NumTools	Some utilitary function for numerical calculus
Cbpp::OneDimensionOptimizationTools	Tools of one parameter-functions optimizations
Cbpp::OptimizationEvent	An event object which indicates that an optimization event occured
►Cbpp::OptimizationListener	The listener interface for receiving optimization events
Cbpp::BackupListener	Save intermediate optimization results to file
Cbpp::AbstractDiscreteDistribution::Order	Comparator class for AbstractDiscreteDistribution
Cbpp::VectorTools::order_Cmp_< T >
Cbpp::Graph::OUTGOINGNEIGHBORITER
Cbpp::ParameterGrid	This class is a data structure to specify a set of parameter values (most likely for evaluation by a Function)
Cbpp::StatTools::PValue_
Cbpp::RandomTools	Utilitary function dealing with random numbers
►Cbpp::RangeCollection< T >	Interface discribing a collection of Range objects
Cbpp::MultiRange< T >	This class implements a data structure describing a set of non-overlapping intervals
Cbpp::RangeSet< T >	This class implements a data structure describing a set of intervals
Cbpp::rangeComp_< T >	A special class used inside RangeCollection
Cbpp::DownhillSimplexMethod::Simplex
Cbpp::StateChangedEvent
Cbpp::StateListener
Cbpp::StatTools	Statistics tools and utilitary functions
►Cbpp::StringTokenizer	A tokenizer for strings
Cbpp::NestedStringTokenizer	An improved tokenizer for strings
►Cstd::vector< T >	STL class
Cbpp::BppVector< T >	The BppVector object class. This class extends the std::vector class to support the Clonable interface
Cbpp::VectorTools