bpp::AbstractCoreSequence Member List

This is the complete list of members for bpp::AbstractCoreSequence, including all inherited members.

AbstractCoreSequence(const std::string &name)	bpp::AbstractCoreSequence	inline
AbstractCoreSequence(const std::string &name, const Comments &comments)	bpp::AbstractCoreSequence	inline
AbstractCoreSequence()	bpp::AbstractCoreSequence	inline
AbstractCoreSequence(const AbstractCoreSequence &s)	bpp::AbstractCoreSequence	inline
AbstractCoreSequence(const CoreSequenceInterface &s)	bpp::AbstractCoreSequence	inline
alphabet() const =0	bpp::CruxSymbolListInterface	pure virtual
bpp::clearComments()=0	bpp::Commentable	pure virtual
bpp::SimpleCommentable::clearComments() override	bpp::SimpleCommentable	inlinevirtual
clone() const override=0	bpp::AbstractCoreSequence	pure virtual
Commentable()	bpp::Commentable	inline
comments_	bpp::SimpleCommentable	protected
CoreSequenceInterface()	bpp::CoreSequenceInterface	inline
deleteElement(size_t pos)=0	bpp::CruxSymbolListInterface	pure virtual
deleteElements(size_t pos, size_t len)=0	bpp::CruxSymbolListInterface	pure virtual
getAlphabet() const =0	bpp::CruxSymbolListInterface	pure virtual
bpp::getComments() const =0	bpp::Commentable	pure virtual
bpp::SimpleCommentable::getComments() const override	bpp::SimpleCommentable	inlinevirtual
getName() const override	bpp::AbstractCoreSequence	inlinevirtual
getStateValueAt(size_t position, int state) const =0	bpp::CruxSymbolListInterface	pure virtual
name_	bpp::AbstractCoreSequence	private
operator()(size_t position, int state) const =0	bpp::CruxSymbolListInterface	pure virtual
operator=(const AbstractCoreSequence &s)	bpp::AbstractCoreSequence	inline
operator=(const CoreSequenceInterface &s)	bpp::AbstractCoreSequence	inline
bpp::SimpleCommentable::operator=(const SimpleCommentable &com)	bpp::SimpleCommentable	inline
bpp::setComments(const Comments &comments)=0	bpp::Commentable	pure virtual
bpp::SimpleCommentable::setComments(const Comments &comments) override	bpp::SimpleCommentable	inlinevirtual
setName(const std::string &name) override	bpp::AbstractCoreSequence	inlinevirtual
setToSizeL(size_t newSize)=0	bpp::CoreSequenceInterface	pure virtual
setToSizeR(size_t newSize)=0	bpp::CoreSequenceInterface	pure virtual
shuffle()=0	bpp::CruxSymbolListInterface	pure virtual
SimpleCommentable()	bpp::SimpleCommentable	inline
SimpleCommentable(const Comments &comments)	bpp::SimpleCommentable	inline
SimpleCommentable(const SimpleCommentable &com)	bpp::SimpleCommentable	inline
size() const =0	bpp::CruxSymbolListInterface	pure virtual
toString() const =0	bpp::CruxSymbolListInterface	pure virtual
~AbstractCoreSequence()	bpp::AbstractCoreSequence	inlinevirtual
~Clonable()=default	bpp::Clonable	virtual
~Commentable()	bpp::Commentable	inlinevirtual
~CoreSequenceInterface()	bpp::CoreSequenceInterface	inlinevirtual
~CruxSymbolListInterface()	bpp::CruxSymbolListInterface	inlinevirtual
~SimpleCommentable()	bpp::SimpleCommentable	inlinevirtual