Here is a list of all class members with links to the classes they belong to:

- i -

• i_ : bpp::BadIntException
• IAlignment() : bpp::IAlignment
• id : bpp::SequenceNotFoundException , bpp::SiteNotFoundException
• IDistanceMatrix() : bpp::IDistanceMatrix
• index_ : bpp::CompressedVectorSiteContainer , bpp::Fasta::FileIndex , bpp::SimpleIndexDistance , bpp::UserAlphabetIndex1 , bpp::UserAlphabetIndex2
• indexMatrix_ : bpp::GranthamAAChemicalDistance , bpp::MiyataAAChemicalDistance , bpp::SimpleIndexDistance
• indexVector() : bpp::AAChargeIndex , bpp::AAChenGuHuangHydrophobicityIndex , bpp::AAChouFasmanAHelixIndex , bpp::AAChouFasmanBSheetIndex , bpp::AAChouFasmanTurnIndex , bpp::AAIndex1Entry , bpp::AAMassIndex , bpp::AASEA1030Index , bpp::AASEAInf10Index , bpp::AASEASup30Index , bpp::AASurfaceIndex , bpp::AAVolumeIndex , bpp::AlphabetIndex1 , bpp::CodonFromProteicAlphabetIndex1 , bpp::GranthamAAPolarityIndex , bpp::GranthamAAVolumeIndex , bpp::KD_AAHydropathyIndex , bpp::KleinAANetChargeIndex , bpp::UserAlphabetIndex1
• init() : bpp::SequenceAnnotation , bpp::SequenceMask , bpp::SequenceQuality
• init_() : bpp::AscidianMitochondrialGeneticCode , bpp::CiliateNuclearGeneticCode , bpp::EchinodermMitochondrialGeneticCode , bpp::InvertebrateMitochondrialGeneticCode , bpp::MoldMitochondrialGeneticCode , bpp::StandardGeneticCode , bpp::VertebrateMitochondrialGeneticCode , bpp::YeastMitochondrialGeneticCode
• insertObject() : bpp::PositionedNamedContainerInterface< T > , bpp::VectorMappedContainer< T > , bpp::VectorPositionedContainer< T >
• insertSequence() : bpp::CompressedVectorSiteContainer , bpp::TemplateAlignedSequenceContainer< SequenceType, SiteType > , bpp::TemplateSequenceContainerInterface< SequenceType, HashType > , bpp::TemplateVectorSequenceContainer< SequenceType > , bpp::TemplateVectorSiteContainer< SiteType, SequenceType >
• IntegerAlphabet() : bpp::IntegerAlphabet
• intList_ : bpp::AbstractAlphabet
• IntSymbolList() : bpp::IntSymbolList
• IntSymbolListInterface() : bpp::IntSymbolListInterface
• intToChar() : bpp::AbstractAlphabet , bpp::Alphabet , bpp::RNY
• intToValue() : bpp::NumericAlphabet
• invert() : bpp::SequenceTools , bpp::SequenceWithQualityTools
• invertComplement() : bpp::SequenceTools
• InvertebrateMitochondrialGeneticCode() : bpp::InvertebrateMitochondrialGeneticCode
• IODistanceMatrix() : bpp::IODistanceMatrix
• IODistanceMatrixFactory() : bpp::IODistanceMatrixFactory
• IOProbabilisticSequence() : bpp::IOProbabilisticSequence
• IOSequence() : bpp::IOSequence
• IoSequenceFactory() : bpp::IoSequenceFactory
• IOSequenceStream() : bpp::IOSequenceStream
• IProbabilisticAlignment() : bpp::IProbabilisticAlignment
• IProbabilisticSequence() : bpp::IProbabilisticSequence
• isAllelicAlphabet() : bpp::AlphabetTools
• isAltStart() : bpp::AscidianMitochondrialGeneticCode , bpp::CiliateNuclearGeneticCode , bpp::EchinodermMitochondrialGeneticCode , bpp::GeneticCode , bpp::InvertebrateMitochondrialGeneticCode , bpp::MoldMitochondrialGeneticCode , bpp::StandardGeneticCode , bpp::VertebrateMitochondrialGeneticCode , bpp::YeastMitochondrialGeneticCode
• isAvailableName() : bpp::MappedNamedContainer< T >
• isAvailablePosition() : bpp::VectorPositionedContainer< T >
• isBinaryAlphabet() : bpp::AlphabetTools
• isCharInAlphabet() : bpp::AbstractAlphabet , bpp::Alphabet , bpp::LetterAlphabet
• isCodonAlphabet() : bpp::AlphabetTools
• isComplete() : bpp::SymbolListTools
• isConstant() : bpp::SymbolListTools
• isDefaultAlphabet() : bpp::AlphabetTools
• isDNAAlphabet() : bpp::AlphabetTools
• isDoubleton() : bpp::SymbolListTools
• ISequence() : bpp::ISequence
• isFourFoldDegenerated() : bpp::CodonSiteTools , bpp::GeneticCode
• isGap() : bpp::AbstractAlphabet , bpp::Alphabet , bpp::NumericAlphabet , bpp::RNY
• isGapOnly() : bpp::SymbolListTools
• isGapOrUnresolvedOnly() : bpp::SymbolListTools
• isIntegerAlphabet() : bpp::AlphabetTools
• isIntInAlphabet() : bpp::AbstractAlphabet , bpp::Alphabet
• isMasked() : bpp::CaseMaskedAlphabet
• isMonoSitePolymorphic() : bpp::CodonSiteTools
• isNucleicAlphabet() : bpp::AlphabetTools
• isOn() : bpp::SwitchDeleter< T >
• isParsimonyInformativeSite() : bpp::SymbolListTools
• isProteicAlphabet() : bpp::AlphabetTools
• isRemovable() : bpp::CoreSymbolListListener< T > , bpp::SequenceMask , bpp::SequenceQuality
• isResolvedIn() : bpp::AbstractAlphabet , bpp::AllelicAlphabet , bpp::Alphabet , bpp::BinaryAlphabet , bpp::CodonAlphabet , bpp::DNA , bpp::ProteicAlphabet , bpp::RNA , bpp::RNY , bpp::WordAlphabet
• isRNAAlphabet() : bpp::AlphabetTools
• isRNYAlphabet() : bpp::AlphabetTools
• isShared() : bpp::CoreSymbolListListener< T > , bpp::SequenceMask , bpp::SequenceQuality
• isStart() : bpp::GeneticCode
• isStop() : bpp::AscidianMitochondrialGeneticCode , bpp::CiliateNuclearGeneticCode , bpp::EchinodermMitochondrialGeneticCode , bpp::GeneticCode , bpp::InvertebrateMitochondrialGeneticCode , bpp::MoldMitochondrialGeneticCode , bpp::StandardGeneticCode , bpp::VertebrateMitochondrialGeneticCode , bpp::YeastMitochondrialGeneticCode
• isSymmetric() : bpp::AAIndex2Entry , bpp::AlphabetIndex2 , bpp::BLOSUM50 , bpp::CodonFromProteicAlphabetIndex2 , bpp::DefaultNucleotideScore , bpp::GranthamAAChemicalDistance , bpp::MiyataAAChemicalDistance , bpp::SimpleIndexDistance , bpp::SimpleScore , bpp::UserAlphabetIndex2
• isSymmetric_ : bpp::CodonFromProteicAlphabetIndex2
• isSynonymousPolymorphic() : bpp::CodonSiteTools
• isTriplet() : bpp::SymbolListTools
• isUnresolved() : bpp::AllelicAlphabet , bpp::Alphabet , bpp::BinaryAlphabet , bpp::CaseMaskedAlphabet , bpp::CodonAlphabet , bpp::DefaultAlphabet , bpp::IntegerAlphabet , bpp::LexicalAlphabet , bpp::NucleicAlphabet , bpp::NumericAlphabet , bpp::ProteicAlphabet , bpp::RNY , bpp::WordAlphabet
• isValidWith() : bpp::SequenceAnnotation , bpp::SequenceMask , bpp::SequenceQuality
• isWordAlphabet() : bpp::AlphabetTools