| addCoreSymbolListListener(CoreSymbolListListener< int > *listener) | bpp::EdSymbolList< int > | inlinevirtual |
| bpp::EdCoreSymbolList::addCoreSymbolListListener(CoreSymbolListListener< T > *listener)=0 | bpp::EdCoreSymbolList< T > | pure virtual |
| addElement(const std::string &c) | bpp::EdIntSymbolList | virtual |
| addElement(size_t pos, const std::string &c) | bpp::EdIntSymbolList | virtual |
| EdSymbolList< int >::addElement(const int &v) | bpp::EdSymbolList< int > | inlinevirtual |
| EdSymbolList< int >::addElement(size_t pos, const int &v) | bpp::EdSymbolList< int > | inlinevirtual |
| bpp::CoreSymbolList::addElement(const T &c)=0 | bpp::CoreSymbolList< T > | pure virtual |
| bpp::CoreSymbolList::addElement(size_t pos, const T &c)=0 | bpp::CoreSymbolList< T > | pure virtual |
| addIntSymbolListListener(IntSymbolListListener *listener) | bpp::EdIntSymbolList | inline |
| afterSequenceChanged(const IntSymbolListEditionEvent &event) | bpp::EdIntSymbolList | inlineprotectedvirtual |
| bpp::EdCoreSymbolList::afterSequenceChanged(const CoreSymbolListEditionEvent< T > &event)=0 | bpp::EdCoreSymbolList< T > | protectedpure virtual |
| afterSequenceDeleted(const IntSymbolListDeletionEvent &event) | bpp::EdIntSymbolList | inlineprotectedvirtual |
| bpp::EdCoreSymbolList::afterSequenceDeleted(const CoreSymbolListDeletionEvent< T > &event)=0 | bpp::EdCoreSymbolList< T > | protectedpure virtual |
| afterSequenceInserted(const IntSymbolListInsertionEvent &event) | bpp::EdIntSymbolList | inlineprotectedvirtual |
| bpp::EdCoreSymbolList::afterSequenceInserted(const CoreSymbolListInsertionEvent< T > &event)=0 | bpp::EdCoreSymbolList< T > | protectedpure virtual |
| afterSequenceSubstituted(const IntSymbolListSubstitutionEvent &event) | bpp::EdIntSymbolList | inlineprotectedvirtual |
| bpp::EdCoreSymbolList::afterSequenceSubstituted(const CoreSymbolListSubstitutionEvent< T > &event)=0 | bpp::EdCoreSymbolList< T > | protectedpure virtual |
| alphabet_ | bpp::SymbolList< int > | private |
| beforeSequenceChanged(const IntSymbolListEditionEvent &event) | bpp::EdIntSymbolList | inlineprotectedvirtual |
| bpp::EdCoreSymbolList::beforeSequenceChanged(const CoreSymbolListEditionEvent< T > &event)=0 | bpp::EdCoreSymbolList< T > | protectedpure virtual |
| beforeSequenceDeleted(const IntSymbolListDeletionEvent &event) | bpp::EdIntSymbolList | inlineprotectedvirtual |
| bpp::EdCoreSymbolList::beforeSequenceDeleted(const CoreSymbolListDeletionEvent< T > &event)=0 | bpp::EdCoreSymbolList< T > | protectedpure virtual |
| beforeSequenceInserted(const IntSymbolListInsertionEvent &event) | bpp::EdIntSymbolList | inlineprotectedvirtual |
| bpp::EdCoreSymbolList::beforeSequenceInserted(const CoreSymbolListInsertionEvent< T > &event)=0 | bpp::EdCoreSymbolList< T > | protectedpure virtual |
| beforeSequenceSubstituted(const IntSymbolListSubstitutionEvent &event) | bpp::EdIntSymbolList | inlineprotectedvirtual |
| bpp::EdCoreSymbolList::beforeSequenceSubstituted(const CoreSymbolListSubstitutionEvent< T > &event)=0 | bpp::EdCoreSymbolList< T > | protectedpure virtual |
| clone() const | bpp::EdIntSymbolList | inlinevirtual |
| content_ | bpp::SymbolList< int > | protected |
| deleteElement(size_t pos) | bpp::EdSymbolList< int > | inlinevirtual |
| deleteElements(size_t pos, size_t len) | bpp::EdSymbolList< int > | inlinevirtual |
| EdIntSymbolList(const Alphabet *alpha) | bpp::EdIntSymbolList | inline |
| EdIntSymbolList(const std::vector< std::string > &list, const Alphabet *alpha) | bpp::EdIntSymbolList | |
| EdIntSymbolList(const std::vector< int > &list, const Alphabet *alpha) | bpp::EdIntSymbolList | |
| EdIntSymbolList(const IntSymbolList &list) | bpp::EdIntSymbolList | |
| EdIntSymbolList(const EdIntSymbolList &list) | bpp::EdIntSymbolList | |
| EdSymbolList(const Alphabet *alpha) | bpp::EdSymbolList< int > | inlineprotected |
| EdSymbolList(const std::vector< int > &list, const Alphabet *alpha) | bpp::EdSymbolList< int > | inlineprotected |
| EdSymbolList(const CoreSymbolList< int > &list) | bpp::EdSymbolList< int > | inlineprotected |
| EdSymbolList(const EdSymbolList< int > &list) | bpp::EdSymbolList< int > | inlineprotected |
| fireAfterSequenceChanged(const CoreSymbolListEditionEvent< int > &event) | bpp::EdSymbolList< int > | inlineprotected |
| bpp::EdCoreSymbolList::fireAfterSequenceChanged(const CoreSymbolListEditionEvent< T > &event)=0 | bpp::EdCoreSymbolList< T > | protectedpure virtual |
| fireAfterSequenceDeleted(const CoreSymbolListDeletionEvent< int > &event) | bpp::EdSymbolList< int > | inlineprotected |
| bpp::EdCoreSymbolList::fireAfterSequenceDeleted(const CoreSymbolListDeletionEvent< T > &event)=0 | bpp::EdCoreSymbolList< T > | protectedpure virtual |
| fireAfterSequenceInserted(const CoreSymbolListInsertionEvent< int > &event) | bpp::EdSymbolList< int > | inlineprotected |
| bpp::EdCoreSymbolList::fireAfterSequenceInserted(const CoreSymbolListInsertionEvent< T > &event)=0 | bpp::EdCoreSymbolList< T > | protectedpure virtual |
| fireAfterSequenceSubstituted(const CoreSymbolListSubstitutionEvent< int > &event) | bpp::EdSymbolList< int > | inlineprotected |
| bpp::EdCoreSymbolList::fireAfterSequenceSubstituted(const CoreSymbolListSubstitutionEvent< T > &event)=0 | bpp::EdCoreSymbolList< T > | protectedpure virtual |
| fireBeforeSequenceChanged(const CoreSymbolListEditionEvent< int > &event) | bpp::EdSymbolList< int > | inlineprotected |
| bpp::EdCoreSymbolList::fireBeforeSequenceChanged(const CoreSymbolListEditionEvent< T > &event)=0 | bpp::EdCoreSymbolList< T > | protectedpure virtual |
| fireBeforeSequenceDeleted(const CoreSymbolListDeletionEvent< int > &event) | bpp::EdSymbolList< int > | inlineprotected |
| bpp::EdCoreSymbolList::fireBeforeSequenceDeleted(const CoreSymbolListDeletionEvent< T > &event)=0 | bpp::EdCoreSymbolList< T > | protectedpure virtual |
| fireBeforeSequenceInserted(const CoreSymbolListInsertionEvent< int > &event) | bpp::EdSymbolList< int > | inlineprotected |
| bpp::EdCoreSymbolList::fireBeforeSequenceInserted(const CoreSymbolListInsertionEvent< T > &event)=0 | bpp::EdCoreSymbolList< T > | protectedpure virtual |
| fireBeforeSequenceSubstituted(const CoreSymbolListSubstitutionEvent< int > &event) | bpp::EdSymbolList< int > | inlineprotected |
| bpp::EdCoreSymbolList::fireBeforeSequenceSubstituted(const CoreSymbolListSubstitutionEvent< T > &event)=0 | bpp::EdCoreSymbolList< T > | protectedpure virtual |
| getAlphabet() const | bpp::SymbolList< int > | inlinevirtual |
| getChar(size_t pos) const | bpp::EdIntSymbolList | virtual |
| getContent() const | bpp::SymbolList< int > | inlinevirtual |
| getElement(size_t pos) const | bpp::SymbolList< int > | inlinevirtual |
| getListener(size_t i) const | bpp::EdSymbolList< int > | inlinevirtual |
| getListener(size_t i) | bpp::EdSymbolList< int > | inlinevirtual |
| getNumberOfListeners() const | bpp::EdSymbolList< int > | inlinevirtual |
| SymbolList< int >::getStateValueAt(size_t siteIndex, int state) const | bpp::CruxSymbolList | inlinevirtual |
| bpp::EdCoreSymbolList::getStateValueAt(size_t siteIndex, int state) const | bpp::EdCoreSymbolList< T > | inlinevirtual |
| getValue(size_t pos) const | bpp::SymbolList< int > | inlinevirtual |
| listeners_ | bpp::EdSymbolList< int > | protected |
| SymbolList< int >::operator()(size_t siteIndex, int state) const | bpp::CruxSymbolList | inlinevirtual |
| bpp::EdCoreSymbolList::operator()(size_t siteIndex, int state) const | bpp::EdCoreSymbolList< T > | inlinevirtual |
| operator=(const IntSymbolList &list) | bpp::EdIntSymbolList | |
| operator=(const EdIntSymbolList &list) | bpp::EdIntSymbolList | |
| EdSymbolList< int >::operator=(const CoreSymbolList< int > &list) | bpp::EdSymbolList< int > | inlineprotected |
| EdSymbolList< int >::operator=(const EdSymbolList &list) | bpp::EdSymbolList< int > | inlineprotected |
| SymbolList< int >::operator=(const SymbolList< int > &list) | bpp::SymbolList< int > | inline |
| operator[](size_t pos) const | bpp::SymbolList< int > | inlinevirtual |
| operator[](size_t pos) | bpp::SymbolList< int > | inlinevirtual |
| propagateEvents(bool yn) | bpp::EdSymbolList< int > | inlineprotectedvirtual |
| propagateEvents() const | bpp::EdSymbolList< int > | inlineprotectedvirtual |
| propagateEvents_ | bpp::EdSymbolList< int > | private |
| removeCoreSymbolListListener(CoreSymbolListListener< int > *listener) | bpp::EdSymbolList< int > | inlinevirtual |
| bpp::EdCoreSymbolList::removeCoreSymbolListListener(CoreSymbolListListener< T > *listener)=0 | bpp::EdCoreSymbolList< T > | pure virtual |
| setContent(const std::vector< std::string > &list) | bpp::EdIntSymbolList | virtual |
| setContent(const std::vector< int > &list) | bpp::EdIntSymbolList | virtual |
| bpp::CoreSymbolList::setContent(const std::vector< T > &list)=0 | bpp::CoreSymbolList< T > | pure virtual |
| setElement(size_t pos, const std::string &c) | bpp::EdIntSymbolList | virtual |
| EdSymbolList< int >::setElement(size_t pos, const int &v) | bpp::EdSymbolList< int > | inlinevirtual |
| bpp::CoreSymbolList::setElement(size_t pos, const T &c)=0 | bpp::CoreSymbolList< T > | pure virtual |
| shuffle() | bpp::SymbolList< int > | inlinevirtual |
| size() const | bpp::SymbolList< int > | inlinevirtual |
| SymbolList(const Alphabet *alpha) | bpp::SymbolList< int > | inline |
| SymbolList(const std::vector< int > &list, const Alphabet *alpha) | bpp::SymbolList< int > | inline |
| SymbolList(const SymbolList< int > &list) | bpp::SymbolList< int > | inline |
| SymbolList(const CoreSymbolList< int > &list) | bpp::SymbolList< int > | inline |
| toString() const | bpp::EdIntSymbolList | virtual |
| ~Clonable()=default | bpp::Clonable | virtual |
| ~CoreSymbolList() | bpp::CoreSymbolList< T > | inlinevirtual |
| ~CruxSymbolList() | bpp::CruxSymbolList | inlinevirtual |
| ~EdCoreSymbolList() | bpp::EdCoreSymbolList< T > | inlinevirtual |
| ~EdIntSymbolList() | bpp::EdIntSymbolList | inline |
| ~EdSymbolList() | bpp::EdSymbolList< int > | inlineprotectedvirtual |
| ~SymbolList() | bpp::SymbolList< int > | inlinevirtual |
1.9.1