CoreSite.h

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// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
#ifndef BPP_SEQ_CORESITE_H
#define BPP_SEQ_CORESITE_H
 
#include <Bpp/Clonable.h>
#include "CoreSymbolList.h"
 
namespace bpp
{
class CoreSiteInterface :
  public virtual CruxSymbolListInterface
{
public:
  CoreSiteInterface* clone() const override = 0;
 
  // class destructor
  virtual ~CoreSiteInterface() {}
 
  virtual int getCoordinate() const = 0;
 
  virtual void setCoordinate(int coordinate) = 0;
 
  virtual double getStateValueAt(size_t sequencePosition, int state) const override = 0;
};
 
class AbstractCoreSite :
  public virtual CoreSiteInterface
{
private:
  int coordinate_;
 
public:
  AbstractCoreSite() :
    coordinate_(0) {}
 
  AbstractCoreSite(int coordinate) :
    coordinate_(coordinate) {}
 
  AbstractCoreSite(const CoreSiteInterface& site) :
    coordinate_(site.getCoordinate()) {}
 
  AbstractCoreSite(const AbstractCoreSite& site) :
    coordinate_(site.coordinate_) {}
 
  AbstractCoreSite& operator=(const CoreSiteInterface& site)
  {
    coordinate_ = site.getCoordinate();
    return *this;
  }
 
  AbstractCoreSite& operator=(const AbstractCoreSite& site)
  {
    coordinate_ = site.coordinate_;
    return *this;
  }
 
  // class destructor
  virtual ~AbstractCoreSite() {}
 
public:
  int getCoordinate() const override { return coordinate_; }
 
  void setCoordinate(int coordinate) override { coordinate_ = coordinate; }
};
} // end of namespace bpp.
#endif // BPP_SEQ_CORESITE_H