PhredPoly.h

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// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
#ifndef BPP_SEQ_IO_PHREDPOLY_H
#define BPP_SEQ_IO_PHREDPOLY_H
 
 
#include "../Sequence.h"
#include "ISequenceStream.h"
 
namespace bpp
{
class PhredPoly : public ISequenceStream
{
protected:
  double ratio_;
 
public:
  PhredPoly(double ratio = 0.8);
 
  virtual ~PhredPoly() {}
 
public:
  bool nextSequence(std::istream& input, Sequence& seq) const;
  const std::string getDataType() const { return "Sequence"; }
  const std::string getFormatName() const { return "poly file"; }
  const std::string getFormatDescription() const
  {
    return "Sequences following the poly format as describe in the phred documentation.";
  }
};
} // end of namespace bpp
#endif // BPP_SEQ_IO_PHREDPOLY_H