bpp::NexusTools Class Reference

Tools for parsing Nexus files. More...

#include <Bpp/Seq/Io/NexusTools.h>

Static Public Member Functions
static std::string	getNextNonCommentLine (std::istream &input)
static bool	getNextCommand (std::istream &input, std::string &name, std::string &arguments, bool lineBrk=true)
	parse the next command name within a block. More...

Detailed Description

Tools for parsing Nexus files.

The Nexus format is described in the following paper: Maddison D, Swofford D, and Maddison W (1997), Syst Biol 46(4):590-621

Author

Julien Dutheil

Definition at line 23 of file NexusTools.h.

Member Function Documentation

getNextCommand()

bool NexusTools::getNextCommand ( std::istream &  input, std::string &  name, std::string &  arguments, bool  lineBrk = true  )

static

parse the next command name within a block.

Parameters

input	[in] The input stream.
name	[out] Will contain the name of the command.
arguments	[out] Will contain the arguments of the commands, as raw data. The arguments will not be parsed.
lineBrk	[in] Tell is the line break should be preserved in the arguments.

Returns

Whether a command was found in the current block.

Exceptions

IOException

In case of bad format.

Definition at line 38 of file NexusTools.cpp.

References bpp::TextTools::endsWith(), bpp::TextTools::removeSurroundingWhiteSpaces(), and bpp::TextTools::startsWith().

Referenced by bpp::NexusIOSequence::appendAlignmentFromStream().

getNextNonCommentLine()

std::string NexusTools::getNextNonCommentLine ( std::istream &  input )

static

Parameters

input

The input stream.

Returns

A string containing the next line in the file wichi is not empty and is no a comment line.

Definition at line 13 of file NexusTools.cpp.

References bpp::FileTools::getNextLine(), and bpp::TextTools::removeSurroundingWhiteSpaces().

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The documentation for this class was generated from the following files:

• Bpp/Seq/Io/NexusTools.h
• Bpp/Seq/Io/NexusTools.cpp