bpp::SequenceWithAnnotationTools Class Reference

The SequenceWithAnnotationTools static class. More...

#include <Bpp/Seq/SequenceWithAnnotationTools.h>

Public Member Functions
std::unique_ptr< SequenceWithAnnotation >	createMaskAnnotation (const Sequence &seq)
	Parse a sequence with a CaseMaskedAlphabet and creates a new SequenceWithAnnotation object with original alphabet and a mask annotation. More...

Detailed Description

The SequenceWithAnnotationTools static class.

Implement methods to manipulate SequencesWithAnnotation

Author

Julien Dutheil

Definition at line 159 of file SequenceWithAnnotationTools.h.

Member Function Documentation

createMaskAnnotation()

unique_ptr< SequenceWithAnnotation > SequenceWithAnnotationTools::createMaskAnnotation

(

const Sequence &

seq

)

Parse a sequence with a CaseMaskedAlphabet and creates a new SequenceWithAnnotation object with original alphabet and a mask annotation.

Parameters

seq	The sequence to parse.

Returns

A new SequenceWithAnnotation object.

Exceptions

AlphabetException

if the input sequence does not have a CaseMaskedAlphabet.

Definition at line 39 of file SequenceWithAnnotationTools.cpp.

References bpp::AbstractTemplateSymbolList< T >::getAlphabet(), bpp::SimpleCommentable::getComments(), bpp::AbstractCoreSequence::getName(), bpp::AbstractTemplateSymbolList< T >::size(), and bpp::Sequence::toString().

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The documentation for this class was generated from the following files:

• Bpp/Seq/SequenceWithAnnotationTools.h
• Bpp/Seq/SequenceWithAnnotationTools.cpp