matrixStats: Functions that Apply to Rows and Columns of Matrices (and to Vectors)

High-performing functions operating on rows and columns of matrices, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized. There are also optimized vector-based methods, e.g. binMeans(), madDiff() and weightedMedian().

Version: 0.57.0
Depends: R (≥ 2.12.0)
Suggests: base64enc, ggplot2, knitr, microbenchmark, R.devices, R.rsp
Published: 2020-09-25
Author: Henrik Bengtsson [aut, cre, cph], Hector Corrada Bravo [ctb], Robert Gentleman [ctb], Ola Hossjer [ctb], Harris Jaffee [ctb], Dongcan Jiang [ctb], Peter Langfelder [ctb], Peter Hickey [ctb], Brian Montgomery [ctb], Constantin Ahlmann-Eltze [ctb]
Maintainer: Henrik Bengtsson <henrikb at braju.com>
BugReports: https://github.com/HenrikBengtsson/matrixStats/issues
License: Artistic-2.0
URL: https://github.com/HenrikBengtsson/matrixStats
NeedsCompilation: yes
Materials: NEWS
CRAN checks: matrixStats results

Downloads:

Reference manual: matrixStats.pdf
Vignettes: matrixStats: Summary of functions
Package source: matrixStats_0.57.0.tar.gz
Windows binaries: r-devel: matrixStats_0.57.0.zip, r-release: matrixStats_0.57.0.zip, r-oldrel: matrixStats_0.57.0.zip
macOS binaries: r-release: matrixStats_0.57.0.tgz, r-oldrel: matrixStats_0.57.0.tgz
Old sources: matrixStats archive

Reverse dependencies:

Reverse depends: antiProfiles, aSPU, bahc, BayesTwin, BRISC, BSW, Clomial, DelayedArray, DisHet, ExCluster, FastHCS, FastPCS, FastRCS, GAD, GGPA, GUniFrac, InfiniumPurify, localgauss, LS2Wstat, MatrixGenerics, methylumi, miRecSurv, POMaSPU, r2dRue, RAC, RnBeads, shinyMethyl, SICtools, sindyr, splitFeas, SRGnet, STROMA4, StructFDR, ttScreening, wateRmelon
Reverse imports: abcrf, ACNE, adjclust, AMARETTO, amplican, apollo, aroma.affymetrix, aroma.cn, aroma.core, aroma.light, BASiCS, BatchQC, baystability, bdynsys, bigstep, bingat, biscuiteer, bmrm, bnbc, bnclassify, brms, BSgenome, bumphunter, calmate, CARBayesST, carx, CATALYST, celda, cellWise, CEMiTool, ChAMP, CHARGE, Chicago, childhoodmortality, ChIPpeakAnno, chromswitch, cliqueMS, clusterExperiment, clustifyr, cmapR, cna, cnaOpt, CNVScope, coin, cointmonitoR, cointReg, cola, conquer, consensus, consensusOV, CopywriteR, corrcoverage, cosinor2, CpGFilter, crlmm, crossmeta, cSEM, DAMOCLES, dearseq, DelayedMatrixStats, DeMixT, DepecheR, DGCA, DHS.rates, diffloop, DiscoRhythm, DMCFB, dmrseq, Doscheda, doseR, dplR, EasyqpcR, ecospat, eGST, EMDomics, EMMAgeo, ENmix, EnrichedHeatmap, EpiDISH, epiGWAS, eseis, estudy2, evaluomeR, EventPointer, expss, FADA, fairsubset, fastshap, fergm, fishpond, flowCore, flowSpy, flowWorkspace, FRASER, funtooNorm, fxTWAPLS, GAPGOM, gcapc, GenEst, GeneTonic, genomation, GenRank, ggdmc, GJRM, GLMMadaptive, GNET2, GPrank, graper, GUIDEseq, Gviz, gwasurvivr, haldensify, haploReconstruct, hipathia, IMIFA, ImpactEffectsize, incidental, jointseg, kgschart, kissDE, kpmt, LFDREmpiricalBayes, liger, loo, lspartition, ltmle, Luminescence, M3Drop, maic, matrixTests, mcmcsae, MEAL, MEDseq, metagene, metagenomeSeq, MetaNeighbor, methrix, MethylAid, MFHD, mgcViz, MHTcop, microsamplingDesign, MIGSA, MinimumDistance, mixOmics, mnem, moc.gapbk, MoEClust, monocle, MOSim, motifbreakR, mrfDepth, MSstatsTMT, multiviewtest, muscat, NanoStringDiff, NetLogoR, neurobase, NormalyzerDE, nparMD, obfuscatoR, omicplotR, omicsPrint, omicwas, OptimalDesign, OUTRIDER, pandaR, PathoStat, peakPick, PepsNMR, phosphonormalizer, Pigengene, PINSPlus, pmp, PrecisionTrialDrawer, ProteoMM, PSCBS, QDNAseq, randomizationInference, RCarb, rhierbaps, RJcluster, RNAmodR, RTCC, samr, scDblFinder, scmap, scone, scPCA, sctransform, seeds, semtree, sensobol, sesame, Seurat, SGP, SIAMCAT, singleCellTK, singscore, sizeMat, slingshot, sparseMatrixStats, spathial, splatter, spqn, stability, stapler, staRdom, statar, stm, subtee, summarytools, SuperPCA, surveysd, sva, target, TCA, tenXplore, topGO, treeHMM, VanillaICE, vasp, visualFields, WGCNA, Wrench, XBSeq, yarn
Reverse suggests: bigPint, ChemoSpec2D, cifti, collapse, DatabionicSwarm, DeepBlueR, DEqMS, detrendr, dtree, FDb.FANTOM4.promoters.hg19, gap, LSAmitR, metavizr, methylumi, MultiBD, muscData, nandb, pcaMethods, regsem, scHOT, Single.mTEC.Transcriptomes, TOAST, tximport, zinbwave

Linking:

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