bpp-phyl3  3.0.0
bpp::ConfiguredTransitionMatrix Member List

This is the complete list of members for bpp::ConfiguredTransitionMatrix, including all inherited members.

AbstractParametrizable(const std::string &prefix)bpp::AbstractParametrizable
accessValueConst() const noexceptbpp::Value< const HmmTransitionMatrix * >inline
accessValueMutable() noexceptbpp::Value< const HmmTransitionMatrix * >inlineprotected
addParameter_(Parameter *parameter)bpp::AbstractParametrizableprotectedvirtual
addParameters_(const ParameterList &parameters)bpp::AbstractParametrizableprotectedvirtual
clone() constbpp::ConfiguredTransitionMatrixinlinevirtual
color() const finalbpp::ConfiguredTransitionMatrixinlinevirtual
compareAdditionalArguments(const Node_DF &other) constbpp::ConfiguredTransitionMatrixvirtual
compute()bpp::ConfiguredTransitionMatrixinlineprivatevirtual
computeRecursively()bpp::Node_DF
configbpp::ConfiguredTransitionMatrix
ConfiguredTransitionMatrix(Context &context, NodeRefVec &&deps, std::unique_ptr< HmmTransitionMatrix > &&hmm)bpp::ConfiguredTransitionMatrix
debugInfo() const finalbpp::ConfiguredTransitionMatrixvirtual
deleteParameter_(size_t index)bpp::AbstractParametrizableprotectedvirtual
deleteParameter_(std::string &name)bpp::AbstractParametrizableprotectedvirtual
deleteParameters_(const std::vector< std::string > &names)bpp::AbstractParametrizableprotectedvirtual
dependencies() const noexceptbpp::Node_DFinline
dependency(std::size_t i) const noexceptbpp::Node_DFinline
dependencyNodes_bpp::Node_DFprivate
dependentNodes() const noexceptbpp::Node_DFinline
dependentNodes_bpp::Node_DFprivate
derive(Context &c, const Node_DF &node)bpp::Node_DFvirtual
deriveAsValue(Context &c, const Node_DF &node)bpp::Value< const HmmTransitionMatrix * >inline
description() const finalbpp::ConfiguredTransitionMatrixvirtual
fireParameterChanged(const ParameterList &parameters)bpp::AbstractParametrizablevirtual
getConfiguredParameter(const std::string &name) constbpp::ConfiguredTransitionMatrixinline
getNamespace() const overridebpp::AbstractParametrizablevirtual
getNumberOfParameters() const overridebpp::AbstractParametrizablevirtual
getParameter(const std::string &name) constbpp::AbstractParametrizable
getParameter(size_t i) constbpp::AbstractParametrizableprotected
getParameter(size_t i)bpp::AbstractParametrizableprotected
getParameter_(const std::string &name)bpp::AbstractParametrizableprotected
getParameter_(size_t index)bpp::AbstractParametrizableprotected
getParameter_(size_t index) constbpp::AbstractParametrizableprotected
getParameterNameWithoutNamespace(const std::string &name) const overridebpp::AbstractParametrizablevirtual
getParameters() const overridebpp::AbstractParametrizablevirtual
getParameters_() overridebpp::AbstractParametrizableprotectedvirtual
getParameterValue(const std::string &name) const overridebpp::AbstractParametrizablevirtual
getParameterWithNamespace_(const std::string &name)bpp::AbstractParametrizableprotected
getParameterWithNamespace_(const std::string &name) constbpp::AbstractParametrizableprotected
hashAdditionalArguments() constbpp::ConfiguredTransitionMatrixvirtual
hasNumericalProperty(NumericalProperty prop) constbpp::Node_DFvirtual
hasParameter(const std::string &name) const overridebpp::AbstractParametrizablevirtual
hmm_bpp::ConfiguredTransitionMatrixprivate
includeParameters_(const ParameterList &parameters)bpp::AbstractParametrizableprotectedvirtual
invalidateRecursively() noexceptbpp::Node_DFprotected
isValid() const noexceptbpp::Node_DFinline
isValid_bpp::Node_DFprivate
makeInvalid() noexceptbpp::Node_DFinlineprotected
makeValid() noexceptbpp::Node_DFinlineprotected
matchParametersValues(const ParameterList &parameters) overridebpp::AbstractParametrizablevirtual
modify(Callable &&modifier, bool makeValid)bpp::Value< const HmmTransitionMatrix * >inline
nbDependencies() const noexceptbpp::Node_DFinline
nbDependentNodes() const noexceptbpp::Node_DFinline
Node_DF()=defaultbpp::Node_DF
Node_DF(const Node_DF &)=deletebpp::Node_DF
Node_DF(Node_DF &&)=deletebpp::Node_DF
Node_DF(const NodeRefVec &dependenciesArg)bpp::Node_DF
Node_DF(NodeRefVec &&dependenciesArg)bpp::Node_DF
operator=(const Node_DF &)=deletebpp::Node_DF
operator=(Node_DF &&)=deletebpp::Node_DF
parameter(const std::string &name) const overridebpp::AbstractParametrizablevirtual
parameters_bpp::AbstractParametrizableprivate
Parametrizable()bpp::Parametrizable
prefix_bpp::AbstractParametrizableprivate
recreate(Context &c, NodeRefVec &&deps) finalbpp::ConfiguredTransitionMatrixvirtual
registerNode(Node_DF *n)bpp::Node_DFprivate
removeConstraint(const std::string &name) overridebpp::AbstractParametrizablevirtual
resetDependencies_(NodeRefVec &&dependenciesArg)bpp::Node_DFinlineprotected
resetParameters_()bpp::AbstractParametrizableprotected
Self typedefbpp::ConfiguredTransitionMatrix
setAllParametersValues(const ParameterList &parameters) overridebpp::AbstractParametrizablevirtual
setConstraint(const std::string &name, std::shared_ptr< ConstraintInterface > constraint) overridebpp::AbstractParametrizablevirtual
setNamespace(const std::string &prefix) overridebpp::AbstractParametrizablevirtual
setParametersValues(const ParameterList &parameters) overridebpp::AbstractParametrizablevirtual
setParameterValue(const std::string &name, double value) overridebpp::AbstractParametrizablevirtual
shape() constbpp::Node_DFinlinevirtual
shareParameter_(const std::shared_ptr< Parameter > &parameter)bpp::AbstractParametrizableprotectedvirtual
shareParameters_(const ParameterList &parameters)bpp::AbstractParametrizableprotectedvirtual
Target typedefbpp::ConfiguredTransitionMatrix
targetValue()bpp::Value< const HmmTransitionMatrix * >inline
unregisterNode(const Node_DF *n)bpp::Node_DFprivate
Value(const NodeRefVec &deps, Args &&... args)bpp::Value< const HmmTransitionMatrix * >inline
Value(NodeRefVec &&deps, Args &&... args)bpp::Value< const HmmTransitionMatrix * >inline
value_bpp::Value< const HmmTransitionMatrix * >private
~AbstractParametrizable()bpp::AbstractParametrizablevirtual
~Clonable()=defaultbpp::Clonablevirtual
~ConfiguredTransitionMatrix()bpp::ConfiguredTransitionMatrix
~Node_DF()bpp::Node_DFvirtual
~Parametrizable()bpp::Parametrizablevirtual