- f -
- F0 : bpp::CodonFrequencySetInterface
- F1X4 : bpp::CodonFrequencySetInterface
- F3X4 : bpp::CodonFrequencySetInterface
- F61 : bpp::CodonFrequencySetInterface
- f_ : bpp::ExtendedFloat
- factor_ : bpp::CWiseConstantPow< T >
- factors_ : bpp::AbstractSinglePhyloSubstitutionMapping
- FAST : bpp::NNITopologySearch
- father_ : bpp::AwareNode, bpp::Node
- file_ : bpp::Coala
- firstLeaf : bpp::TreeTemplateTools::OrderTreeData_
- firstOrderDerivativeNodes_ : bpp::AbstractPhyloLikelihood
- firstOrderDerivativeVectors_ : bpp::OnABranchPhyloLikelihood, bpp::OneProcessSequencePhyloLikelihood, bpp::SingleProcessPhyloLikelihood
- fitName_ : bpp::AbstractCodonAAFitnessSubstitutionModel, bpp::AbstractCodonFitnessSubstitutionModel
- flt : bpp::LikelihoodCalculationSingleProcess::RateCategoryTrees
- fontBootstrapValues : bpp::TreeDrawingSettings
- fontBranchLengths : bpp::TreeDrawingSettings
- fontLeafNames : bpp::TreeDrawingSettings
- fontNodesId : bpp::TreeDrawingSettings
- forwardLik_ : bpp::HmmLikelihood_DF
- forwardTree_ : bpp::BackwardLikelihoodTree
- fractionalProbabilities_ : bpp::StochasticMapping
- freq_ : bpp::AbstractFrequencySet, bpp::AbstractTransitionModel, bpp::MarkovModulatedSubstitutionModel
- freqColl_ : bpp::CollectionNodes, bpp::SubstitutionProcessCollection
- freqName_ : bpp::AbstractCodonFrequenciesSubstitutionModel, bpp::AbstractCodonPhaseFrequenciesSubstitutionModel
- freqSet_ : bpp::CodonAdHocSubstitutionModel
- freqset_ : bpp::ConfiguredFrequencySet
- freqSet_ : bpp::D1WalkSubstitutionModel, bpp::DSO78, bpp::EquiprobableSubstitutionModel, bpp::JCprot, bpp::JTT92, bpp::LG08, bpp::MarkovModulatedFrequencySet, bpp::UserProteinSubstitutionModel, bpp::WAG01
- FREQUENCE_CONSTRAINT_CENTI : bpp::FrequencySetInterface
- FREQUENCE_CONSTRAINT_MILLI : bpp::FrequencySetInterface
- FREQUENCE_CONSTRAINT_SMALL : bpp::FrequencySetInterface
- from_ : bpp::MixtureOfATransitionModel
- function_ : bpp::NaNListener