- f -

• F0 : bpp::CodonFrequencySetInterface
• F1X4 : bpp::CodonFrequencySetInterface
• F3X4 : bpp::CodonFrequencySetInterface
• F61 : bpp::CodonFrequencySetInterface
• f_ : bpp::ExtendedFloat
• factor_ : bpp::CWiseConstantPow< T >
• factors_ : bpp::AbstractSinglePhyloSubstitutionMapping
• FAST : bpp::NNITopologySearch
• father_ : bpp::AwareNode , bpp::Node
• file_ : bpp::Coala
• firstLeaf : bpp::TreeTemplateTools::OrderTreeData_
• firstOrderDerivativeNodes_ : bpp::AbstractPhyloLikelihood
• firstOrderDerivativeVectors_ : bpp::OnABranchPhyloLikelihood , bpp::OneProcessSequencePhyloLikelihood , bpp::SingleProcessPhyloLikelihood
• fitName_ : bpp::AbstractCodonAAFitnessSubstitutionModel , bpp::AbstractCodonFitnessSubstitutionModel
• flt : bpp::LikelihoodCalculationSingleProcess::RateCategoryTrees
• fontBootstrapValues : bpp::TreeDrawingSettings
• fontBranchLengths : bpp::TreeDrawingSettings
• fontLeafNames : bpp::TreeDrawingSettings
• fontNodesId : bpp::TreeDrawingSettings
• forwardLik_ : bpp::HmmLikelihood_DF
• forwardTree_ : bpp::BackwardLikelihoodTree
• fractionalProbabilities_ : bpp::StochasticMapping
• freq_ : bpp::AbstractFrequencySet , bpp::AbstractTransitionModel , bpp::MarkovModulatedSubstitutionModel
• freqColl_ : bpp::CollectionNodes , bpp::SubstitutionProcessCollection
• freqName_ : bpp::AbstractCodonFrequenciesSubstitutionModel , bpp::AbstractCodonPhaseFrequenciesSubstitutionModel
• freqSet_ : bpp::CodonAdHocSubstitutionModel
• freqset_ : bpp::ConfiguredFrequencySet
• freqSet_ : bpp::D1WalkSubstitutionModel , bpp::DSO78 , bpp::EquiprobableSubstitutionModel , bpp::JCprot , bpp::JTT92 , bpp::LG08 , bpp::MarkovModulatedFrequencySet , bpp::UserProteinSubstitutionModel , bpp::WAG01
• FREQUENCE_CONSTRAINT_CENTI : bpp::FrequencySetInterface
• FREQUENCE_CONSTRAINT_MILLI : bpp::FrequencySetInterface
• FREQUENCE_CONSTRAINT_SMALL : bpp::FrequencySetInterface
• from_ : bpp::MixtureOfATransitionModel
• function_ : bpp::NaNListener